Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_H20
         (1074 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   8.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 391 GTPFPXGKXPXPGGPEXXPP 332
           G+P    + P PGGP   PP
Sbjct: 37  GSPPNPSQGPPPGGPPGAPP 56


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 74  PQGKGPKPRWAXRXEFSPGN 15
           PQ + P PR     E  PGN
Sbjct: 107 PQPRPPHPRLRREPEAEPGN 126



 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 74  PQGKGPKPRWAXRXEFSPGN 15
           PQ + P PR     E  PGN
Sbjct: 133 PQPRPPHPRLRREPEAEPGN 152


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 129 FLGRLSGPIPLPWGXMAFP 185
           FLGRL+ P P     ++FP
Sbjct: 81  FLGRLANPTPQSITLISFP 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,858
Number of Sequences: 438
Number of extensions: 7212
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35909298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)