Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_H19
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 147 2e-36
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 98 1e-21
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 96 6e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 89 7e-19
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 89 7e-19
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 85 1e-17
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 81 2e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 81 2e-16
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 78 1e-15
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 72 1e-13
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 71 1e-13
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 70 3e-13
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 69 1e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 69 1e-12
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 67 2e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 66 4e-12
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 64 2e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 62 7e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 62 7e-11
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 62 9e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 59 6e-10
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 55 1e-08
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 50 5e-07
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 4.1
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 26 7.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.5
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 25 9.5
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 147 bits (356), Expect = 2e-36
Identities = 71/150 (47%), Positives = 99/150 (66%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
L+L PTREL Q H+V ++A F +K QE LR+ PDIVIATPGR ID
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 358 HIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEVKDL 537
H+RN+ F + +IE++V+DE DRML++ FA+++ EII+ C RQTMLFSATM ++V DL
Sbjct: 394 HMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDL 453
Query: 538 AAVSLXKPVKLVVNSNKEVAFNLRXEFXXI 627
+SL +PV++ V++ K A L EF +
Sbjct: 454 IRLSLNRPVRVFVDNKKTTAKLLTQEFVRV 483
Score = 48.0 bits (109), Expect = 2e-06
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = +3
Query: 3 LDFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLLYKAK 152
L F PT IQ TIP+ALLGKD+ +++PILERLLY+ K
Sbjct: 277 LGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPK 326
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 98.3 bits (234), Expect = 1e-21
Identities = 53/144 (36%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Frame = +1
Query: 151 KEGTGSPXXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIV 330
+ GTG +++ PTREL Q+ V ++L ++ + + + L + +++
Sbjct: 159 RNGTG---VIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLL 215
Query: 331 IATPGRLIDHIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQC-SPKRQTMLFS 507
+ATPGRL+DH++NT F ++ LV+DE DR+L+ F ++M++I++ S RQT+LFS
Sbjct: 216 VATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFS 275
Query: 508 ATMXEEVKDLAAVSLXKPVKLVVN 579
AT +V+DLA +SL KP L VN
Sbjct: 276 ATQTTKVEDLARISL-KPGPLYVN 298
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 3 LDFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLLYKAK 152
+ F T IQ +IP L G+DV +++P +E +LY K
Sbjct: 107 MGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIE-MLYALK 155
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 95.9 bits (228), Expect = 6e-21
Identities = 48/135 (35%), Positives = 77/135 (57%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
+VL PTREL Q+ + D+ Q L + P +++ TPGRL+D
Sbjct: 118 VVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMD 177
Query: 358 HIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEVKDL 537
H+ NT F L +++ L++DE DR+LD F + +I++ +R+T+LFSATM +V+ L
Sbjct: 178 HLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKL 237
Query: 538 AAVSLXKPVKLVVNS 582
SL +PV++ V+S
Sbjct: 238 QRASLHQPVRVAVSS 252
Score = 31.1 bits (67), Expect = 0.19
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 3 LDFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 137
L F PTPIQ IP+ L +DV + LP+++ L
Sbjct: 64 LGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQEL 108
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 89.0 bits (211), Expect = 7e-19
Identities = 54/151 (35%), Positives = 74/151 (49%), Gaps = 2/151 (1%)
Frame = +1
Query: 151 KEGTGSPXXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIV 330
K G G P +++ PTREL Q+ + + +K Q + L++ +IV
Sbjct: 487 KTGEG-PIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIV 545
Query: 331 IATPGRLIDHIRNTPS--FGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQCSPKRQTMLF 504
+ TPGR+ID + LH LVLDE DRM D F Q+ II P RQT+LF
Sbjct: 546 VCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLF 605
Query: 505 SATMXEEVKDLAAVSLXKPVKLVVNSNKEVA 597
SAT ++ LA L KPV++ V VA
Sbjct: 606 SATFPRAMEALARKVLKKPVEITVGGRSVVA 636
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 3 LDFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 137
L + PT IQA IP G+DV ++LP+ +
Sbjct: 436 LGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHI 480
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 89.0 bits (211), Expect = 7e-19
Identities = 51/150 (34%), Positives = 78/150 (52%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
L+L P REL Q V + ++ ++ Q S+L PDIV+ATPGR +
Sbjct: 143 LILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL- 201
Query: 358 HIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEVKDL 537
H++ L SIE +V DE DR+ + FA Q+ EI+ RQT+LFSAT+ + D
Sbjct: 202 HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDF 261
Query: 538 AAVSLXKPVKLVVNSNKEVAFNLRXEFXXI 627
A L PV + ++ +V+ +L+ F +
Sbjct: 262 AKAGLQDPVLVRLDVESKVSADLQSAFFSV 291
Score = 34.7 bits (76), Expect = 0.016
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 9 FVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 137
F PTPIQ TIP+ L G+DV +++P++E L
Sbjct: 89 FKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHL 131
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 84.6 bits (200), Expect = 1e-17
Identities = 48/136 (35%), Positives = 72/136 (52%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
LV+ PTREL Q ++ + + K ++ L + +I++ TPGRL+
Sbjct: 115 LVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRM-NILVCTPGRLLQ 173
Query: 358 HIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEVKDL 537
HI +F +++L+LDE DR+LD F + I+ RQTMLFSAT + VKDL
Sbjct: 174 HIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDL 233
Query: 538 AAVSLXKPVKLVVNSN 585
A +SL P + V+ N
Sbjct: 234 ARLSLQNPDFISVHEN 249
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 81.0 bits (191), Expect = 2e-16
Identities = 51/138 (36%), Positives = 72/138 (52%)
Frame = +1
Query: 169 PXXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 348
P LVL PTREL Q+ + + Q L + +I IATPGR
Sbjct: 196 PIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGR 255
Query: 349 LIDHIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEV 528
L+D + + + L + LVLDE DRMLD F Q+++I+ Q P RQT++FSAT +EV
Sbjct: 256 LLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEV 314
Query: 529 KDLAAVSLXKPVKLVVNS 582
+ LA L +++ V S
Sbjct: 315 QRLARDYLNDYIQVTVGS 332
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 3 LDFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 128
L F PTPIQ P+A+ G+D+ Y LP +
Sbjct: 140 LGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAI 181
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 80.6 bits (190), Expect = 2e-16
Identities = 54/148 (36%), Positives = 74/148 (50%), Gaps = 5/148 (3%)
Frame = +1
Query: 169 PXXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 348
P LV+ PTREL Q + L Q K +++ +N ++I TPGR
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP-KSEQARAAKNASVIIGTPGR 295
Query: 349 LIDHIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQC-----SPKRQTMLFSAT 513
L+D I N S + LVLDE DRMLD F + ++ II + RQT+ FSAT
Sbjct: 296 LLDLI-NDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSAT 354
Query: 514 MXEEVKDLAAVSLXKPVKLVVNSNKEVA 597
E V+ LAA L PVK+ + S++ A
Sbjct: 355 WPESVRALAATFLKDPVKITIGSDELAA 382
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 6 DFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 137
++ PTPIQAAT P L G+DV + +P L+ L
Sbjct: 184 NYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYL 227
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 78.2 bits (184), Expect = 1e-15
Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Frame = +1
Query: 169 PXXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 348
P L+L PTREL Q+H +R+ D++ Q + Q D++ ATPGR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315
Query: 349 LIDHIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQCS----PKRQTMLFSATM 516
L+D I + L +I+ LVLDE DRMLD F Q++ I+ +RQT++FSAT
Sbjct: 316 LVDLI-DRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATF 374
Query: 517 XEEVKDLA 540
+++ LA
Sbjct: 375 PRDIQLLA 382
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 9 FVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 128
+ PTP+Q +IPI G+D+ ++ PIL
Sbjct: 189 YTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 71.7 bits (168), Expect = 1e-13
Identities = 39/137 (28%), Positives = 69/137 (50%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
L+L PTREL Q+ V L V+ + L+ +V+ TPGR+ D
Sbjct: 91 LILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHD 150
Query: 358 HIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEVKDL 537
I+ + ++++ VLDE D ML F +Q+ +I + P Q +L SATM ++V ++
Sbjct: 151 MIQRR-ALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEV 209
Query: 538 AAVSLXKPVKLVVNSNK 588
+ P++++V ++
Sbjct: 210 TTKFMRDPIRILVKKDE 226
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 71.3 bits (167), Expect = 1e-13
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
L+L PTREL Q+ L D+ Q L + P +V+ATPGRL D
Sbjct: 79 LILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLAD 138
Query: 358 HIRNTPS---FGLHSIEVLVLDEXDRMLDEYFAEQMKEI--IRQCSPKRQTMLFSATMXE 522
IR+ GL I+ LV+DE DR+L FA+ + + + S RQT+LF+AT+ +
Sbjct: 139 LIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTD 198
Query: 523 EVKDL 537
++ L
Sbjct: 199 AIRQL 203
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 70.1 bits (164), Expect = 3e-13
Identities = 42/150 (28%), Positives = 71/150 (47%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
L+L PTREL Q+ V L V L +V TPGR+ D
Sbjct: 93 LILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTD 152
Query: 358 HIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEVKDL 537
IR + ++++L+LDE D +L++ F EQ+ +I R P Q ++ SAT+ ++V ++
Sbjct: 153 MIRRR-NLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEM 211
Query: 538 AAVSLXKPVKLVVNSNKEVAFNLRXEFXXI 627
PV+++V ++ L+ F +
Sbjct: 212 TNKFTTNPVRILVKRDELTLEGLKQYFIAV 241
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 68.5 bits (160), Expect = 1e-12
Identities = 49/145 (33%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVK--YQESVLRQNPDIVIATPGRL 351
L+LVPTREL QV+ V +L F + Q +L PDIVIATP R
Sbjct: 92 LLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRC 151
Query: 352 IDHIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEVK 531
+ H+ + L ++ LV+DE D ML + E MK + R Q+ L SAT+ + +
Sbjct: 152 VVHVASGV-LPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIA 210
Query: 532 DLAAVSLXKPVKLVVNSNKEVAFNL 606
L + P L V +KE + L
Sbjct: 211 SLQKLVCRNPFILAV-KDKEASGKL 234
Score = 39.9 bits (89), Expect = 4e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 6 DFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLL 140
+F PT +Q+ TIP+AL GKD+ Y++PILE LL
Sbjct: 33 EFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLL 77
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 68.5 bits (160), Expect = 1e-12
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 3/141 (2%)
Frame = +1
Query: 163 GSPXXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESV--LRQNPDIVIA 336
G +++ PTREL Q++ +L+ F + K QE LR+ D+ I
Sbjct: 114 GGYRAIIVAPTRELCEQIYRQAEKLS-FGTSLKIIELSKSNEKIQEKAPKLREKYDMCIG 172
Query: 337 TPGRLIDHIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQC-SPKRQTMLFSAT 513
TP RL+ I+ SF +E V+DE DR+ + F EQ I+ C S LFSAT
Sbjct: 173 TPMRLVQAIQTGLSF--EKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSAT 230
Query: 514 MXEEVKDLAAVSLXKPVKLVV 576
+ V++LA V P++++V
Sbjct: 231 IPSRVEELAKVVTVDPIRIIV 251
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 67.3 bits (157), Expect = 2e-12
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQ-NPDIVIATPGRLI 354
++L PTREL Q+ R+L +E+ +R+ N +++IATPGRL
Sbjct: 116 VILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLE 175
Query: 355 DHIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQ-CSPKRQTMLFSATMXEEVK 531
DH++N S + +LDE DR++D FAE + I + K + + FSATM +V
Sbjct: 176 DHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVS 235
Query: 532 DLAAVSLXKPVKLV 573
++ L KL+
Sbjct: 236 NVFRGILGTDFKLI 249
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 66.5 bits (155), Expect = 4e-12
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Frame = +1
Query: 142 TRRKEGTGSPXXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKY--------- 294
TRR L++ PTREL Q+ VT++L + Y
Sbjct: 64 TRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTN 123
Query: 295 -QESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIR 471
S +NP +VI TPGRL + + + S +E+L+LDE D ++D F ++ II
Sbjct: 124 DLASFREKNPSVVIGTPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQSIIS 180
Query: 472 QCSPKRQTMLFSATMXEEVKDLAAVS 549
Q +R+T LFSATM + V ++
Sbjct: 181 QLPKQRRTGLFSATMNDTVSSFLKIA 206
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 9 FVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 137
F TP+QA IP+ L KD+ Y+LP +++
Sbjct: 21 FKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKV 63
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 64.1 bits (149), Expect = 2e-11
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Frame = +1
Query: 169 PXXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 348
P +VL PTREL Q+ + A+ + Q + Q IV+ATPGR
Sbjct: 326 PYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGR 385
Query: 349 LIDHIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEII-------------------R 471
L+D + F L +V+DE DRMLD F + + +I+
Sbjct: 386 LLDCLERR-LFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATAN 444
Query: 472 QCSPKRQTMLFSATMXEEVKDLAAVSLXKPVKLVVNS 582
S +RQT++FSAT+ V +LA L +PV L + +
Sbjct: 445 SSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGN 481
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 62.5 bits (145), Expect = 7e-11
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 16/141 (11%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQ---FXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 348
+++ PTREL Q++ V +L K +++ +R+ +I+I TPGR
Sbjct: 220 VIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGR 279
Query: 349 LIDHIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEII----RQCS--------PKRQ 492
L DH+ NT + + + +VLDE DR++D F E + +I+ Q S P R+
Sbjct: 280 LADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRK 339
Query: 493 -TMLFSATMXEEVKDLAAVSL 552
TML SATM + VK L+ +L
Sbjct: 340 VTMLCSATMKDTVKRLSDSAL 360
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 62.5 bits (145), Expect = 7e-11
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNP-----DIVIATP 342
+V+VPTREL QV ++++ L + D++++TP
Sbjct: 209 VVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTP 268
Query: 343 GRLIDHIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQCS-PK 486
GRL+DHIRN SF L + +V+DE DR+LD+ F + + ++ + S PK
Sbjct: 269 GRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPK 317
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 62.1 bits (144), Expect = 9e-11
Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 5/152 (3%)
Frame = +1
Query: 163 GSPXXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXX-DVKYQESVLR---QNPDIV 330
G LVL TREL Q+ + +++ ++K + ++P IV
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 331 IATPGRLIDHIRNTPSFGLHSIEVLVLDEXDRMLDEY-FAEQMKEIIRQCSPKRQTMLFS 507
+ATPGRL +R ++S++ VLDE D++L+ ++E+ R P++Q M+FS
Sbjct: 178 VATPGRLNALVREK-ILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFS 236
Query: 508 ATMXEEVKDLAAVSLXKPVKLVVNSNKEVAFN 603
AT+ E++ + + P+++ V+ ++ +
Sbjct: 237 ATLSNEIRPICKKFMQNPLEIYVDDETKLTLH 268
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 9 FVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 137
F HP+ +Q IP ++LG DV ++L L+++
Sbjct: 71 FEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQI 113
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 59.3 bits (137), Expect = 6e-10
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
LV+ PTREL Q+ + V+ Q+ +L ++P +V+ATPGRL
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWS 255
Query: 358 HI-RNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEII----RQCSPKRQTMLFSATMXE 522
I N + I+ LVLDE DR+L + E++ +++ +RQT +FSAT E
Sbjct: 256 VINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDE 315
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 9 FVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLL 140
F P PIQ+ IP A +G D+ + +PILE L
Sbjct: 142 FSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCL 185
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 54.8 bits (126), Expect = 1e-08
Identities = 36/131 (27%), Positives = 57/131 (43%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
L+LVPTREL Q V + L + ++ L IV+ TPGR++D
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD 175
Query: 358 HIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEVKDL 537
+ V+DE D++L F +++++ RQ L+SAT VK+
Sbjct: 176 -LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNF 234
Query: 538 AAVSLXKPVKL 570
L KP ++
Sbjct: 235 MDKHLNKPYEI 245
Score = 34.3 bits (75), Expect = 0.021
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 9 FVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 137
F P+PIQ +IPIAL G+D+ +++P LE++
Sbjct: 64 FERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKV 106
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 49.6 bits (113), Expect = 5e-07
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Frame = +1
Query: 169 PXXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 348
P + L P+REL Q+ V ++ ++ K + + IVI TPG
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKI----DAQIVIGTPGT 240
Query: 349 LIDHIRNTPSFGLHSIEVLVLDEXDRMLDEYFAEQMKEIIRQCSPKR-QTMLFSATMXEE 525
++D ++ I+V VLDE D MLD+ I+ P+ Q +LFSAT E
Sbjct: 241 VMDLMKRR-QLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSER 299
Query: 526 VKDLA 540
V+ A
Sbjct: 300 VEKYA 304
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 4.1
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +1
Query: 379 FGLHSIE---VLVLDEXDRMLDEYFAEQMKEIIRQ-CSPKRQTMLFSATMXEEVKDLAAV 546
F +HS + VLDE D LD+ ++ IRQ S Q ++ S K A V
Sbjct: 1146 FAIHSYQPSPFFVLDEIDAALDQTNVTKIANYIRQHASSGFQFVVISLKNQLFSKSEALV 1205
Query: 547 SLXKPVKLVVNSNKEVAFNLRXEFXXI 627
+ + + NS++ ++ N+R F I
Sbjct: 1206 GIYRDQQ--ENSSRTLSINVRDYFFLI 1230
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 448 EQMKEIIRQC-SPKRQTMLFSATMXEEVKDLAAVSLXKPVKLVVNSNKEVAF 600
E E++ S +R F A + DL S KP+ ++ NK++AF
Sbjct: 274 ESSVELVEDAASIQRPNSDFGACNDNSLDDLFQASPIKPIDMLPKINKDIAF 325
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 395 SRFWCWTXLTGCWMNT 442
SRF+C+T + G WM T
Sbjct: 2368 SRFYCYTKMLGEWMFT 2383
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 528 DFLXHGGREQHGL--TFRGTLTDD 463
DF+ +GGREQH + R LT+D
Sbjct: 82 DFIVYGGREQHLMFPLLRAGLTND 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,574
Number of Sequences: 5004
Number of extensions: 50893
Number of successful extensions: 193
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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