Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_H16
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.054
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.29 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.66 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.66 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.66 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   0.77 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    23   1.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 450 PPPPPPXXKXXXXXXXPPPPPXXGGGKXKH 361
           PPPPPP          PPPPP    G  ++
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 450 PPPPPPXXKXXXXXXXPPPPP 388
           PPPPPP          PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 450 PPPPPPXXKXXXXXXXPPPPP 388
           PPPPPP          PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 629 PPPPPPPPP 655
           PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 631 PPPPPPPPP 657
           PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 630 PPPPPPPP 653
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 633 PPPPPPPP 656
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 634 PPPPPPPP 657
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 450 PPPPPPXXKXXXXXXXPPPPP 388
           PPPPPP          PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 30.3 bits (65), Expect = 0.38
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 450 PPPPPPXXKXXXXXXXPPPPP 388
           PPPPPP          PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 447 PPPPPXXKXXXXXXXPPPPPXXG 379
           PPPPP          PPPPP  G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 630 PPPPPPPP 653
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 632 PPPPPPPP 655
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 634 PPPPPPPP 657
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 629 PPPPPPPPP 655
           PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 631 PPPPPPPPP 657
           PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 629 PPPPPPPPP 655
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 631 PPPPPPPPP 657
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 629 PPPPPPPPP 655
           P PPPPPPP
Sbjct: 236 PAPPPPPPP 244



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 631 PPPPPPPPP 657
           P PPPPPPP
Sbjct: 236 PAPPPPPPP 244


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 630 PPPPPPPPP 656
           PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 631 PPPPPPPPP 657
           PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = -1

Query: 513 PPXXXXXXXXXXGGGXXXXXXPPPPPPXXKXXXXXXXPPP 394
           PP          G G      PPPPPP           PP
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 23.8 bits (49), Expect(2) = 0.77
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 634 PPPPPPP 654
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.8 bits (49), Expect(2) = 0.77
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 637 PPPPPPP 657
           PPPPPPP
Sbjct: 337 PPPPPPP 343


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect(2) = 1.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 631 PPPPPPPP 654
           P PPPPPP
Sbjct: 3   PAPPPPPP 10



 Score = 23.4 bits (48), Expect(2) = 1.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 634 PPPPPPPP 657
           PPPPPP P
Sbjct: 5   PPPPPPAP 12


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 630  PPPPPPPP 653
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 632  PPPPPPPP 655
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 634  PPPPPPPP 657
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 630 PPPPPPPP 653
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 632 PPPPPPPP 655
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 634 PPPPPPPP 657
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,394,809
Number of Sequences: 5004
Number of extensions: 17732
Number of successful extensions: 515
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)