Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_H14
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   4.6  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   6.1  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   6.1  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    26   8.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 852 GGGXPPPXXXXXXGXXXXPPPPP 784
           GG  PPP      G    PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 41  LLLKYFNRRNNWRASLGASSPR 106
           +L K F + NNW AS   S+P+
Sbjct: 741 MLFKDFTKHNNWEASTYPSAPK 762


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 654 GXXXXPPPPPPPXXXFF 704
           G    PPPPPPP   F+
Sbjct: 303 GGLPPPPPPPPPSNDFW 319


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 98  CWHPNLPSNCSFG 60
           CW+PNLP N + G
Sbjct: 189 CWNPNLPGNLATG 201


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/60 (26%), Positives = 16/60 (26%)
 Frame = +3

Query: 672 PPPPPPXXXFFXXXPPXXXXFXXXGXPXXXXKXXXXXPAXGGGXXXPPXXXXXGGGGXPP 851
           PPP  P         P        G P          P  G G   PP     G G  PP
Sbjct: 83  PPPMDPSMRGSLLSGPGVARPAGRGIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPP 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,417
Number of Sequences: 5004
Number of extensions: 28114
Number of successful extensions: 239
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)