Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_H12
(829 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 47 2e-07
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 47 2e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 42 9e-06
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 41 1e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 41 1e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 41 2e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 41 2e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 41 2e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 41 2e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 41 2e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 41 2e-05
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 40 2e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 40 2e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 39 5e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 38 1e-04
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 37 2e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 36 3e-04
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 32 0.006
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 31 0.010
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 47.2 bits (107), Expect = 2e-07
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +1
Query: 109 CENATSLSLMIDSXL---ATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIXADLQ 273
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 274 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 375
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 46.8 bits (106), Expect = 2e-07
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Frame = +1
Query: 91 IASAAECENATSLSLMIDSXLATYDRDSPPDSK----IVVNLTLHLRHA---NIRESEST 249
I SA C + D L+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 250 VRIXADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLXXXXXXXXGDYAL-RAR 423
+ L+ W D + W+ E+G T L V SE +W PD+VL G + +A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAI 126
Query: 424 VSNXGSVXW 450
+ G V W
Sbjct: 127 LHYTGKVLW 135
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 41.5 bits (93), Expect = 9e-06
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Frame = +1
Query: 79 LTCAIASAAECENATSLSLMIDSXLATYDRDSPP----DSKIVVNLTLHLRH---ANIRE 237
++C +A + + D L+ Y+R P ++ V + L L N++
Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64
Query: 238 SESTVRIXADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVL 375
T + ++ W D +L WN ++G T V SE +W PD+VL
Sbjct: 65 QIMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVL 109
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 41.1 bits (92), Expect = 1e-05
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 226 NIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL-XXXXXXXX 399
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 400 GDYALRARVSNXGSVXWI 453
G Y V++ GS ++
Sbjct: 153 GTYQTNVVVTHNGSCLYV 170
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 41.1 bits (92), Expect = 1e-05
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 226 NIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL-XXXXXXXX 399
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 400 GDYALRARVSNXGSVXWI 453
G Y V++ GS ++
Sbjct: 153 GTYQTNVVVTHNGSCLYV 170
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Frame = +1
Query: 142 DSXLATYDRDSPPDSKIVVNLTLHLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEW- 318
D+ + + S P + +V L+LH ++ E + + W D L WNA E+
Sbjct: 18 DAGVRPAENSSQPLA-VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFA 75
Query: 319 GCSTWLVSSERLWRPDVVLXXXXXXXXGDYALRAR--VSNXGSVXWI 453
G V R+WRPD +L + VS+ G V W+
Sbjct: 76 GIRVIRVPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWL 122
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 40.7 bits (91), Expect = 2e-05
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 226 NIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL-XXXXXXXX 399
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 400 GDYALRARVSNXGSVXWI 453
G Y V++ GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 40.7 bits (91), Expect = 2e-05
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 226 NIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL-XXXXXXXX 399
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 400 GDYALRARVSNXGSVXWI 453
G Y V++ GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 40.7 bits (91), Expect = 2e-05
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 226 NIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL-XXXXXXXX 399
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 400 GDYALRARVSNXGSVXWI 453
G Y V++ GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 40.7 bits (91), Expect = 2e-05
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 226 NIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL-XXXXXXXX 399
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 400 GDYALRARVSNXGSVXWI 453
G Y V++ GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 40.7 bits (91), Expect = 2e-05
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 226 NIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL-XXXXXXXX 399
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 400 GDYALRARVSNXGSVXWI 453
G Y V++ GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 40.7 bits (91), Expect = 2e-05
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 226 NIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL-XXXXXXXX 399
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 400 GDYALRARVSNXGSVXWI 453
G Y V++ GS ++
Sbjct: 85 GTYQTSVVVTHNGSCLYV 102
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 40.3 bits (90), Expect = 2e-05
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +1
Query: 115 NATSLSLMIDSXLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIXADLQMNW 282
N +++S ++D+ L YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 283 IDKRLSWNAGEWGCSTWLVSSERLWRPD 366
+D+RL++ G+ + + R+W+PD
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPD 89
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 40.3 bits (90), Expect = 2e-05
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Frame = +1
Query: 109 CENATSLSLMIDSXLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIXAD 267
C + D L+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 268 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLXXXXXXXXG-DYALRARVSNXGS 441
++ +W D +L W+ E+G L V S+ +WRPD+VL A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 442 VXW 450
V W
Sbjct: 137 VEW 139
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.1 bits (87), Expect = 5e-05
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +1
Query: 187 KIVVNLTL-HLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 360
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 361 PDVVLXXXXXXXXG-DYALRARVSNXGSVXW 450
PD+VL A +A + + G V W
Sbjct: 113 PDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 37.9 bits (84), Expect = 1e-04
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Frame = +1
Query: 136 MIDSXLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIXADLQMNWIDKR 294
+ D L+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 295 LSWNAGEWGCSTWL-VSSERLWRPDVVL 375
L WN E+G L V SE +W PD+VL
Sbjct: 95 LKWNPEEYGGVEMLYVPSENIWLPDIVL 122
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 37.5 bits (83), Expect = 1e-04
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +1
Query: 187 KIVVNLTL-HLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 360
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 361 PDVVL 375
PD+VL
Sbjct: 113 PDIVL 117
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 37.1 bits (82), Expect = 2e-04
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Frame = +1
Query: 187 KIVVNLTL-HLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 360
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 361 PDVVLXXXXXXXXGDYALRAR----VSNXGSVXWI 453
PD+VL G+Y +R + + G V W+
Sbjct: 111 PDIVL---FNNADGNYEVRYKSNVLIYPNGDVLWV 142
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 36.3 bits (80), Expect = 3e-04
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 268 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVL-XXXXXXXXGDYALRARVSNXGS 441
L++ W D + WN ++G L + RLW+PDV++ G Y V N G+
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
Query: 442 VXWI 453
++
Sbjct: 136 CLYV 139
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 32.3 bits (70), Expect = 0.006
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Frame = +1
Query: 61 FWLPFLLTCAIASAAECENATSLSLMIDSXLATYDRDSPPDS--KIVVNLTLHL--RHAN 228
F +LL C ++ T+L + YD + P S +I N+T+ L +
Sbjct: 27 FGFSYLLNCK-----NYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLME 81
Query: 229 IRESESTVRIXADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDV 369
+ S + + + + + W D LSW ++ G + V S+ +W PD+
Sbjct: 82 FDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVKSDDIWVPDI 129
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 31.5 bits (68), Expect = 0.010
Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 8/133 (6%)
Frame = +1
Query: 124 SLSLMIDSXLATYDRDSPPD----SKIVVNLTLHLRHAN-IRESESTVRIXADLQMNWID 288
++++++++ L Y+ + P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 289 KRLSWNAGEWGCSTWLVSSERLWRPDVVLXXXXXXXXGDYAL---RARVSNXGSVXWIKR 459
RLS+ S + ER+WRPD + R+S G + + R
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMR 155
Query: 460 XDIXTPLSMXLDN 498
I M L N
Sbjct: 156 LTIKAKCPMELRN 168
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,824
Number of Sequences: 438
Number of extensions: 4041
Number of successful extensions: 54
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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