Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_H09
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.11 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   7.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -3

Query: 284 AQEPSHSGPVARLSPHRCTVTGPSIAPPPRRDGAQPDPVPQYSGAAGSKNRPSPSIGGPA 105
           +Q+PS   P  + SPH+        +PP    G  P   P   GA  S+N PS  +  PA
Sbjct: 13  SQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP---GAPPSQN-PSQMMISPA 68



 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 125 PSIGGPAPQ-SEHERPTGCPTRGRGTSTAPRPLSG 24
           PS G P PQ S H+ P   P RG   + +  P  G
Sbjct: 16  PSSGAPGPQPSPHQSPQ-APQRGSPPNPSQGPPPG 49



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 16/59 (27%), Positives = 18/59 (30%)
 Frame = -3

Query: 200 PRRDGAQPDPVPQYSGAAGSKNRPSPSIGGPAPQSEHERPTGCPTRGRGTSTAPRPLSG 24
           P      P P P  S  A  +  P     GP P      P G P     +     P SG
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGG----PPGAPPSQNPSQMMISPASG 70


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 675 AEPTTKCXXCGXEPGHGGTYPPCLP 749
           +EPT +    G   G GG++P   P
Sbjct: 373 SEPTERISPYGYPIGSGGSFPSLYP 397


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -1

Query: 631 STCTRRKVRRPSPRFHPVIKDRVTASTVRSPHVGLANRLDHDSSTDRREWAFRARSSLS 455
           S  +R  + R    +  + K R    +++   VGL N L   S  +  E   + + SLS
Sbjct: 491 SKSSRINIERMKQVYQQLNKYRGNGVSLKGETVGLLNALPPSSMKETEEEKKKTKQSLS 549


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 242 PHRCTVTGPSIAPPPR 195
           P+RC + G + A P R
Sbjct: 91  PYRCNICGKTFAVPAR 106


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 64  RVGQPVGLSCSLCGAGPP 117
           RVG  V + C + G  PP
Sbjct: 323 RVGDNVEIKCDVTGTPPP 340


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 109 GPPIDGDGRFFEPA 150
           GPP DG+G    P+
Sbjct: 355 GPPNDGNGNILSPS 368


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
          protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 4  CIVVWRRP 27
          CIV+WR P
Sbjct: 55 CIVIWRNP 62


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 81  HRLSNTRPRYFNCTPAPIRTPPNH 10
           HR S+   ++ N T  P   PP+H
Sbjct: 329 HRGSSPHHQHGNHTMGPTMGPPHH 352


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = +1

Query: 16   WRRPDRGRGAVEVPRPRVGQPVGLSCSLCGAGPPIDGDGRFFEPAAP 156
            +R P    G     RP     V LS S    G   DG  R   P  P
Sbjct: 1354 YRGPSASGGRPVPERPERVPTVDLSPSPSDRGRNDDGSDRLTSPPTP 1400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,101
Number of Sequences: 438
Number of extensions: 6698
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)