Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_H08
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL022593-3|CAA18635.3|  928|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z66495-11|CAK12849.1|  502|Caenorhabditis elegans Hypothetical p...    28   8.7  
Z66495-2|CAA91267.2|  502|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +3

Query: 582 CPKASSARTETSRGAKGQKLA*SRCSVRIGTAKARPIDPLX*RVFSQEVPEKLPQG*LAC 761
           C   +  R    R + G+  +  R S  +  + A P  P+    F+++ P ++P G ++C
Sbjct: 622 CYSQTLYRNGDGRWSDGRIASRRRVSTSVNKSTAVPGQPVF---FTRDSPSRVPHGVISC 678

Query: 762 GSXRS 776
            S RS
Sbjct: 679 SSPRS 683


>AL022593-3|CAA18635.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +3

Query: 582 CPKASSARTETSRGAKGQKLA*SRCSVRIGTAKARPIDPLX*RVFSQEVPEKLPQG*LAC 761
           C   +  R    R + G+  +  R S  +  + A P  P+    F+++ P ++P G ++C
Sbjct: 622 CYSQTLYRNGDGRWSDGRIASRRRVSTSVNKSTAVPGQPVF---FTRDSPSRVPHGVISC 678

Query: 762 GSXRS 776
            S RS
Sbjct: 679 SSPRS 683


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -2

Query: 456 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 322
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>Z66495-11|CAK12849.1|  502|Caenorhabditis elegans Hypothetical
           protein C36A4.3 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +1

Query: 31  SRVLTQCDFLPSAL-NVNVKKFKQ---ARVNGGSNYDSLKVAKCLXHLISD 171
           S  +T C +L S   NV  K +++   A+ NGG  YDS+   K L ++  +
Sbjct: 317 STAMTYCSYLLSKYPNVQQKLYEEIMEAKENGGLTYDSIHNMKYLDYVYKE 367


>Z66495-2|CAA91267.2|  502|Caenorhabditis elegans Hypothetical
           protein C36A4.2 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +1

Query: 31  SRVLTQCDFLPSAL-NVNVKKFKQ---ARVNGGSNYDSLKVAKCLXHLISD 171
           S  +T C +L S   NV  K +++   A+ NGG  YDS+   K L ++  +
Sbjct: 317 STAMTYCSYLLSKYPNVQQKLYEEIMEAKENGGLTYDSIHNMKYLDYVYKE 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,786,296
Number of Sequences: 27780
Number of extensions: 373707
Number of successful extensions: 975
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)