Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_H07
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0259 + 27955005-27955436,27955685-27955822                       31   1.3  
03_05_0431 + 24221881-24224586                                         29   5.4  
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626...    28   7.2  
10_05_0101 - 9167383-9167679,9167883-9167961,9168161-9168326,916...    28   7.2  
01_06_0096 - 26408159-26408911,26409012-26409440                       28   7.2  
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185...    28   9.5  

>01_06_0259 + 27955005-27955436,27955685-27955822
          Length = 189

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 469 MLCSRSKLSLRNKVTLYKTC-IRPVMTYAKRSVRSLSPHPLEIPSGY 606
           + C    LSL    T  + C  +PV++Y +R+ ++ S  P+   SGY
Sbjct: 75  LACICISLSLAKAFTFSRPCRTQPVISYTQRTWKAASGEPMHAESGY 121


>03_05_0431 + 24221881-24224586
          Length = 901

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 440 ARSRTVFIWG-RNVIPLSRVTPRYLTFETHGMG 345
           AR+RTVF WG  +V  +  + PR + F++ G G
Sbjct: 175 ARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAG 207


>10_08_0683 -
           19860777-19861070,19861677-19861874,19862498-19862659,
           19862763-19862911,19863089-19863236,19863317-19863385,
           19863471-19863719,19863937-19864131,19864444-19864560,
           19864978-19866537
          Length = 1046

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +3

Query: 162 TPDRSSHHGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHPTP 293
           +P RS H     P    + QP+   S  LQ   P   H  +P P
Sbjct: 45  SPSRSFHGYPSAPPPQPQPQPYAHHSAPLQPYPPPPQHHAYPPP 88


>10_05_0101 -
           9167383-9167679,9167883-9167961,9168161-9168326,
           9169201-9169299,9169969-9171361
          Length = 677

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 513 SLQNLYTPRHDVCKA*CS 566
           ++QNLY PR D+C+  CS
Sbjct: 5   TIQNLYAPRADLCEPSCS 22


>01_06_0096 - 26408159-26408911,26409012-26409440
          Length = 393

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 288 WDARSDVRRATPFEGHRCAFRGVDV 214
           WD   D RR  P+ G+  A  G+D+
Sbjct: 289 WDKGGDCRRTRPYRGNETAMGGMDL 313


>03_01_0238 +
           1854070-1854344,1854621-1854712,1854852-1855045,
           1855529-1855568,1855734-1855815,1856972-1857049,
           1857144-1857269,1857544-1857665,1858018-1858057,
           1858250-1858324,1858414-1858585
          Length = 431

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = +1

Query: 118 AIYYSCRKMSLLHRRLQIAVATMGQWFRKWRIDINPTKSAAVPFKRGRPPNITSSIPLRS 297
           AI   CR      RRL  A A   +   +WRID N   +AA   +R        S+P  S
Sbjct: 32  AIRCCCRAQQEPRRRLSKAAAAAPERTEEWRIDGN-KPAAAARGRRRASLTAMPSLPFPS 90

Query: 298 RRA 306
            R+
Sbjct: 91  PRS 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,573,038
Number of Sequences: 37544
Number of extensions: 536063
Number of successful extensions: 1419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)