Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_H01
(837 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 5e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.003
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 33 0.004
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.070
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.070
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 29 0.070
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.093
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.093
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.093
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.093
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.093
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.093
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 27 0.21
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 27 0.21
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 26 0.37
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 26 0.37
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 26 0.37
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 26 0.50
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 0.65
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 2.6
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 6.1
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 6.1
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 35.9 bits (79), Expect = 5e-04
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +1
Query: 79 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 243
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 244 MNWIDKRLSWNAGEW 288
+ W L+W + E+
Sbjct: 88 LMWEQSHLTWKSSEF 102
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 33.1 bits (72), Expect = 0.003
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +1
Query: 85 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 252
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 253 IDKRLSWNAGE 285
+D+RL++ G+
Sbjct: 62 VDRRLAFQGGK 72
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 32.7 bits (71), Expect = 0.004
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Frame = +1
Query: 61 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 219
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 220 VRILADLQMNWIDKRLSWNAGEWGCSTWL 306
+ L+ W D + W+ E+G T L
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTEL 95
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 305 WCPRQRLWRPDVVLLNAA 358
+ P + +W PD+VL N A
Sbjct: 96 YVPSEHIWLPDIVLYNNA 113
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.7 bits (61), Expect = 0.070
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +1
Query: 106 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 270
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 271 WNAGEWG 291
WN E+G
Sbjct: 118 WNESEYG 124
Score = 23.4 bits (48), Expect = 2.6
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +2
Query: 320 RLWRPDVVLLNAA 358
+LW+PD+++ N+A
Sbjct: 135 KLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.7 bits (61), Expect = 0.070
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +1
Query: 106 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 270
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 271 WNAGEWG 291
WN E+G
Sbjct: 118 WNESEYG 124
Score = 23.4 bits (48), Expect = 2.6
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +2
Query: 320 RLWRPDVVLLNAA 358
+LW+PD+++ N+A
Sbjct: 135 KLWKPDILMYNSA 147
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 28.7 bits (61), Expect = 0.070
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Frame = +1
Query: 52 TCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRES 210
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 211 ESTVRILADLQMNWIDKRLSWNAGEWG 291
T + ++ W D +L WN ++G
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYG 90
Score = 24.2 bits (50), Expect = 1.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 311 PRQRLWRPDVVLLNAA 358
P + +W PD+VL N A
Sbjct: 98 PSEHIWLPDIVLYNNA 113
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.093
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 196 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 291
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.6
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +2
Query: 320 RLWRPDVVLLNAA 358
+LW+PD+++ N+A
Sbjct: 67 KLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.093
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 196 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 291
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.6
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +2
Query: 320 RLWRPDVVLLNAA 358
+LW+PD+++ N+A
Sbjct: 67 KLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.093
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 196 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 291
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.6
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +2
Query: 320 RLWRPDVVLLNAA 358
+LW+PD+++ N+A
Sbjct: 67 KLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.093
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 196 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 291
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.6
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +2
Query: 320 RLWRPDVVLLNAA 358
+LW+PD+++ N+A
Sbjct: 67 KLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.093
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 196 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 291
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.6
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +2
Query: 320 RLWRPDVVLLNAA 358
+LW+PD+++ N+A
Sbjct: 67 KLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.093
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 196 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 291
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.6
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +2
Query: 320 RLWRPDVVLLNAA 358
+LW+PD+++ N+A
Sbjct: 67 KLWKPDILMYNSA 79
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 27.1 bits (57), Expect = 0.21
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 311 PRQRLWRPDVVLLNAA 358
P RLW+PDV++ N+A
Sbjct: 101 PPHRLWKPDVLMYNSA 116
Score = 24.2 bits (50), Expect = 1.5
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +1
Query: 58 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 222
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 223 RILADLQMNWIDKRLSWNAGEWG 291
L++ W D + WN ++G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 27.1 bits (57), Expect = 0.21
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +1
Query: 106 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 270
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 271 WNAGEWG 291
WN E+G
Sbjct: 97 WNPEEYG 103
Score = 25.8 bits (54), Expect = 0.50
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 287 GAAALGWCPRQRLWRPDVVLLNAA 358
G + + P + +W PD+VL N A
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNA 126
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.2 bits (55), Expect = 0.37
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 311 PRQRLWRPDVVLLNAA 358
P +WRPD+VL N A
Sbjct: 106 PSDHIWRPDIVLYNNA 121
Score = 24.2 bits (50), Expect = 1.5
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +1
Query: 106 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 270
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 271 WNAGEWG 291
W E+G
Sbjct: 92 WEPKEYG 98
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.2 bits (55), Expect = 0.37
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 311 PRQRLWRPDVVLLNAA 358
P +WRPD+VL N A
Sbjct: 106 PSDHIWRPDIVLYNNA 121
Score = 24.2 bits (50), Expect = 1.5
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +1
Query: 106 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 270
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 271 WNAGEWG 291
W E+G
Sbjct: 92 WEPKEYG 98
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 26.2 bits (55), Expect = 0.37
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Frame = +1
Query: 79 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 237
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 238 LQMNWIDKRLSWNAGEWG 291
++ +W D +L W+ E+G
Sbjct: 77 VEQSWYDYKLKWDPKEYG 94
Score = 26.2 bits (55), Expect = 0.37
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 311 PRQRLWRPDVVLLNAA 358
P +WRPD+VL N A
Sbjct: 102 PSDHIWRPDIVLYNNA 117
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.50
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 311 PRQRLWRPDVVLLNAA 358
P R+WRPD +L N A
Sbjct: 83 PYNRVWRPDTILYNNA 98
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 160 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 288
+V L+LH ++ E + + W D L WNA E+
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEF 74
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.4 bits (53), Expect = 0.65
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 311 PRQRLWRPDVVLLNAA 358
P ++W+PD+VL N A
Sbjct: 104 PPDKVWKPDIVLFNNA 119
Score = 25.0 bits (52), Expect = 0.86
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 157 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG 291
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.4 bits (48), Expect = 2.6
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 85 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 252
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 253 IDKRLSW 273
D RL++
Sbjct: 68 TDPRLAF 74
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.2 bits (45), Expect = 6.1
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1
Query: 85 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 252
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 253 IDKRLSW 273
D RL++
Sbjct: 68 TDPRLAF 74
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.2 bits (45), Expect = 6.1
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = -1
Query: 366 VVAAAFSSTTSGLHKRCRGH-QPSAAAPFPCVPTQS 262
V + S+ S + G PSA AP P +P S
Sbjct: 389 VSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,977
Number of Sequences: 438
Number of extensions: 3029
Number of successful extensions: 51
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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