Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_G24
(860 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 38 1e-04
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 38 2e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 37 3e-04
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 4e-04
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 36 5e-04
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 35 0.001
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 34 0.001
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 34 0.001
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 33 0.003
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 33 0.003
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 33 0.003
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.010
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.010
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.014
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 31 0.018
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.024
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.024
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 30 0.024
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 30 0.024
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 30 0.024
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 30 0.024
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 30 0.032
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.055
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.073
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.073
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 29 0.073
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 27 0.17
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 24 1.6
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 23 4.8
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 6.3
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 6.3
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 6.3
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 6.3
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 37.9 bits (84), Expect = 1e-04
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +2
Query: 332 ERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPXSMQXDNWPNDMQ 502
ER+WRPD N + + R+S +G + + RL I M+ N+P D Q
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQ 174
Query: 503 TC 508
+C
Sbjct: 175 SC 176
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 37.9 bits (84), Expect = 1e-04
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLDISTPXSMQXDNWP 490
V S+ +WRPD+VL N A G+Y + +A V +G V W + S+ + +P
Sbjct: 105 VPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFP 161
Query: 491 NDMQTC 508
D+QTC
Sbjct: 162 YDVQTC 167
Score = 22.2 bits (45), Expect = 6.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 302 TPPAFQLSRLSIQFI*RSACIRTVDSDSRML 210
+PPAF SR + C+R + ++ML
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 37.9 bits (84), Expect = 1e-04
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 323 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQXDNWPNDM 499
V S+ +WRPD+VL NA A +A + + G V W + + + +P D
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDE 164
Query: 500 QTC 508
QTC
Sbjct: 165 QTC 167
Score = 22.2 bits (45), Expect = 6.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 302 TPPAFQLSRLSIQFI*RSACIRTVDSDSRML 210
+PPAF SR + C+R + ++ML
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 37.5 bits (83), Expect = 2e-04
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 323 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQXDNWPNDM 499
V S+ +WRPD+VL NA A +A ++ G V W + + + +P D
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDE 160
Query: 500 QTC 508
QTC
Sbjct: 161 QTC 163
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 36.7 bits (81), Expect = 3e-04
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +2
Query: 332 ERLWRPDVVLLNAAATTAGDYALRAR----VSNNGSVSWIKRLDISTPXSMQXDNWPNDM 499
+++W+PD+VL N A G+Y +R + + NG V W+ + ++ +P D
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQ 162
Query: 500 QTC 508
QTC
Sbjct: 163 QTC 165
Score = 25.8 bits (54), Expect = 0.51
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +1
Query: 172 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNA---GGVGLQHL 318
K+ VN L ++ N+ E ++ L+ W D +L W+ GG+G+ L
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRL 103
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.3 bits (80), Expect = 4e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +1
Query: 94 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 258
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 259 MNWIDKRLSWNA 294
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 35.9 bits (79), Expect = 5e-04
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 299 EWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL-RARVSNNGSVSWIKRLDISTPXSM 472
E+G T L V SE +W PD+VL N A G + +A + G V W + +
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEI 147
Query: 473 QXDNWPNDMQTC 508
+P D QTC
Sbjct: 148 DVRYFPFDQQTC 159
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 34.7 bits (76), Expect = 0.001
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +2
Query: 305 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLDISTPXSM 472
G V SE +W PD+VL N A G+Y + +A + G VSW + +
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSWKPPAIYKSSCEI 160
Query: 473 QXDNWPNDMQTC 508
+ +P D Q+C
Sbjct: 161 NVEYFPFDEQSC 172
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.3 bits (75), Expect = 0.001
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 100 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 267
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 268 IDKRLSWNAG 297
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
Score = 31.5 bits (68), Expect = 0.010
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +2
Query: 335 RLWRPDVVLLNAAAT---TAGDYALRARVSNNGSVSWIKRLDISTPXSMQXDNWPNDMQT 505
R+W+PD N + T R+ +G V + RL I M +N+P D Q
Sbjct: 84 RIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQR 143
Query: 506 C 508
C
Sbjct: 144 C 144
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 34.3 bits (75), Expect = 0.001
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +2
Query: 305 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLDISTPXSM 472
G T V SE +W PD+VL N A G+Y + +A + + G V W + +
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEI 147
Query: 473 QXDNWPNDMQTC 508
+ +P D QTC
Sbjct: 148 DVEYFPFDEQTC 159
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 33.5 bits (73), Expect = 0.003
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 329 SERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPXSMQXDNWPNDM 499
+E++W PD N + D R R+S +GSV++ R + M +P D
Sbjct: 113 AEKIWVPDTFFANDKNSFLHDVTERNKLVRLSGDGSVTYGMRFTTTLACMMDLHYYPLDS 172
Query: 500 QTCTFXV 520
Q CT +
Sbjct: 173 QNCTVEI 179
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 33.5 bits (73), Expect = 0.003
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAAATTAGDYALRAR--VSNNGSVSWIKRLDISTPXSMQXDNWPND 496
V R+WRPD +L N A + VS+ G V W+ + + + +P D
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFD 141
Query: 497 MQTC 508
Q C
Sbjct: 142 EQRC 145
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 33.1 bits (72), Expect = 0.003
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQXDNWPNDM 499
+ RLW+PDV++ N+A G Y V NNG+ ++ + + +P D
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPFDD 159
Query: 500 QTC 508
Q C
Sbjct: 160 QRC 162
Score = 22.2 bits (45), Expect = 6.3
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +1
Query: 73 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 237
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 238 RIQADLQMNWIDKRLSWNAGGVG 306
L++ W D + WN G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 31.5 bits (68), Expect = 0.010
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQXDNWPNDM 499
++ +LW+PD+++ N+A G Y V++NGS ++ + + +P D
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDD 190
Query: 500 QTC 508
Q C
Sbjct: 191 QHC 193
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 306
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 31.5 bits (68), Expect = 0.010
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQXDNWPNDM 499
++ +LW+PD+++ N+A G Y V++NGS ++ + + +P D
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDD 190
Query: 500 QTC 508
Q C
Sbjct: 191 QHC 193
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 306
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 31.1 bits (67), Expect = 0.014
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQXDNWPNDM 499
++ +LW+PD+++ N+A G Y V++NGS ++ + + +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDD 122
Query: 500 QTC 508
Q C
Sbjct: 123 QHC 125
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 306
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 30.7 bits (66), Expect = 0.018
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +1
Query: 121 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 279
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 280 LSWNAGGVGLQHL 318
L +N G L++L
Sbjct: 95 LRFNDFGGRLKYL 107
Score = 28.7 bits (61), Expect = 0.073
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +2
Query: 320 LVSSERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPXSMQXDNWP 490
L + R+W PD+ N + + R+ NGSV + R+ ++ M +P
Sbjct: 109 LTDASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYP 168
Query: 491 NDMQTCT 511
D Q C+
Sbjct: 169 LDRQVCS 175
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.024
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQXDNWPNDM 499
++ +LW+PD+++ N+A G Y V+++GS ++ + M +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDD 122
Query: 500 QTC 508
Q C
Sbjct: 123 QHC 125
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 306
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.024
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQXDNWPNDM 499
++ +LW+PD+++ N+A G Y V+++GS ++ + M +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDD 122
Query: 500 QTC 508
Q C
Sbjct: 123 QHC 125
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 306
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 30.3 bits (65), Expect = 0.024
Identities = 13/64 (20%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +2
Query: 338 LWRPDVVLLNAAATTAGDYALRAR---VSNNGSVSWIKRLDISTPXSMQXDNWPNDMQTC 508
+WRPD NA T + ++ + ++ ++ ++ +L + +M+ +++P+D Q C
Sbjct: 87 IWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQIC 146
Query: 509 TFXV 520
+ +
Sbjct: 147 SMMI 150
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 30.3 bits (65), Expect = 0.024
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Frame = +2
Query: 305 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDIS 457
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 79 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 135
Query: 458 TPXSMQXDNWPNDMQTC 508
M +P D Q C
Sbjct: 136 ASCPMNLQYFPMDRQLC 152
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 30.3 bits (65), Expect = 0.024
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Frame = +2
Query: 305 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDIS 457
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 79 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 135
Query: 458 TPXSMQXDNWPNDMQTC 508
M +P D Q C
Sbjct: 136 ASCPMNLQYFPMDRQLC 152
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 30.3 bits (65), Expect = 0.024
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Frame = +2
Query: 305 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDIS 457
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 18 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 74
Query: 458 TPXSMQXDNWPNDMQTC 508
M +P D Q C
Sbjct: 75 ASCPMNLQYFPMDRQLC 91
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 29.9 bits (64), Expect = 0.032
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAAATT---AGDYALRARVSNNGSVSWIKRLDISTPXSMQXDNWPN 493
V S+ +W PD+ + N+ T G V ++GSVS + + + +WP
Sbjct: 119 VKSDDIWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPY 178
Query: 494 DMQTC 508
D C
Sbjct: 179 DTHRC 183
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 29.1 bits (62), Expect = 0.055
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQXDNWPNDM 499
++ +LW+PD+++ N+A G Y V+++GS ++ + + +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDD 122
Query: 500 QTC 508
Q C
Sbjct: 123 QHC 125
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 306
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.073
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQXDNWPNDM 499
++ +LW+PD+++ N+A G Y V+++GS ++ + + +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDD 122
Query: 500 QTC 508
Q C
Sbjct: 123 QHC 125
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 306
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.073
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 323 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQXDNWPNDM 499
++ +LW+PD+++ N+A G Y V+++GS ++ + + +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDD 122
Query: 500 QTC 508
Q C
Sbjct: 123 QHC 125
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 306
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 28.7 bits (61), Expect = 0.073
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +2
Query: 320 LVSSERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPXSMQXDNWP 490
L + R+W PD+ N + + R+ NGSV + R+ ++ M +P
Sbjct: 109 LTDASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYP 168
Query: 491 NDMQTCT 511
D Q C+
Sbjct: 169 LDRQVCS 175
Score = 27.9 bits (59), Expect = 0.13
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +1
Query: 121 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 279
++D++L YD P D VV + + +R + I + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWLDER 94
Query: 280 LSWNAGGVGLQHL 318
L +N G L++L
Sbjct: 95 LRFNDFGGRLKYL 107
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 27.5 bits (58), Expect = 0.17
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +2
Query: 332 ERLWRPDVVLLNAAATTAGDYALRARVSN-----NGSVSWIKRLDISTPXSMQXDNWPND 496
+ LW+PD LNA + AL + S+ N +V + R+ M+ +P D
Sbjct: 69 DSLWQPDPYFLNAKVSEIA--ALNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMD 126
Query: 497 MQTCTFXV 520
+Q C +
Sbjct: 127 IQICPIYI 134
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 24.2 bits (50), Expect = 1.6
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 332 ERLWRPDVVLLNAAATTAGDYALRAR---VSNNGSVSWIKRLDISTPXSMQXDNWPNDMQ 502
+ +WRPD NA + T + + + ++ ++ +L + +M +P+D Q
Sbjct: 116 KNMWRPDSFFKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNFLIYPHDTQ 175
Query: 503 TC 508
C
Sbjct: 176 EC 177
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 22.6 bits (46), Expect = 4.8
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +1
Query: 172 KIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGGVGLQHLAGVL----GTL 339
+ ++N L + + + ++ + D + N + + S AGGV + AG++ GTL
Sbjct: 239 RAIINTLLSISASCVIAFATSALVSKDSKFNMVHIQNSTLAGGVAIGTAAGMMCQPVGTL 298
Query: 340 V 342
+
Sbjct: 299 I 299
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 22.2 bits (45), Expect = 6.3
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +2
Query: 407 RVSNNGSVSWIKRLDISTPXSMQXDNWPNDMQTCTFXV 520
R+ NG+V+++ R + + + +P D C+F +
Sbjct: 167 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAI 204
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 22.2 bits (45), Expect = 6.3
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +2
Query: 407 RVSNNGSVSWIKRLDISTPXSMQXDNWPNDMQTCTFXV 520
R+ NG+V+++ R + + + +P D C+F +
Sbjct: 167 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAI 204
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 22.2 bits (45), Expect = 6.3
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +2
Query: 407 RVSNNGSVSWIKRLDISTPXSMQXDNWPNDMQTCTFXV 520
R+ NG+V+++ R + + + +P D C+F +
Sbjct: 218 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAI 255
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 22.2 bits (45), Expect = 6.3
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +2
Query: 407 RVSNNGSVSWIKRLDISTPXSMQXDNWPNDMQTCTFXV 520
R+ NG+V+++ R + + + +P D C+F +
Sbjct: 167 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAI 204
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,298
Number of Sequences: 438
Number of extensions: 4549
Number of successful extensions: 63
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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