Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_G22
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.28 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.4  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.5  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    27   4.5  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   6.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.9  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 305 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 406
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 755 PXPXPXXXXXAPPPXXPPXGPPXXXXXXPXXLPSP 859
           P P P     + PP  PP  PP      P   P P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +2

Query: 725 PXPPXXXXXXPXPXPXXXXXAPPPXXPPXGP 817
           P PP        P P     APPP  P   P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = -3

Query: 858 GEGRXXGXXXXXXGGPXGGXXGGGAXXXXXGXGXGXXXXXXGGXG 724
           GEG   G      GGP G   G G      G   G      GG G
Sbjct: 215 GEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +2

Query: 707 PLXXXXPXPPXXXXXXPXPXPXXXXXAPPPXXPPXGPP 820
           P+    P P       P P P      PPP  PP  PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP--PP 783



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/45 (28%), Positives = 14/45 (31%)
 Frame = +2

Query: 725 PXPPXXXXXXPXPXPXXXXXAPPPXXPPXGPPXXXXXXPXXLPSP 859
           P  P      P P P     A PP  PP  P           P+P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 383 FPCVPTQSFVDPIHLKICQYPHGGL 309
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 109 FMTTDLLKLSRVNLKHHIVDPFCSR 35
           F T+DLL++  V  +H  +DPF SR
Sbjct: 713 FDTSDLLEIISVLSEHPQIDPFSSR 737


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 126 LFCYRFLLTCAIASAAECENATSLSLMIDSLLATYDRE 239
           LFC   + T  + S  EC N     +++D+L   Y ++
Sbjct: 301 LFCEECIQTALLDSDFECPNCHRKDVLLDTLNPDYQKQ 338


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = +2

Query: 725  PXPPXXXXXXPXPXPXXXXXAPPPXXPPXGPPXXXXXXPXXLPSP 859
            P PP      P P       A PP  PP  PP      P  +P+P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPP--PPLPASSAP-SVPNP 1746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,052,167
Number of Sequences: 5004
Number of extensions: 59398
Number of successful extensions: 210
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)