Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_G19
         (927 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    27   0.27 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    27   0.27 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    27   0.27 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.84 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.84 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   1.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.9  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   7.8  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 217 ESPPDSKIVVNLTLHLRHANIRESGSTVRILADLQMNWIDXRLSWNAGEWG 369
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+G
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYG 73


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 217 ESPPDSKIVVNLTLHLRHANIRESGSTVRILADLQMNWIDXRLSWNAGEWG 369
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+G
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYG 73


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 217 ESPPDSKIVVNLTLHLRHANIRESGSTVRILADLQMNWIDXRLSWNAGEWG 369
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+G
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYG 73


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 316 LQMNWIDXRLSWNAGEWG 369
           L + W D  L WN  E+G
Sbjct: 56  LSLEWNDYNLKWNESEYG 73


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 316 LQMNWIDXRLSWNAGEWG 369
           L + W D  L WN  E+G
Sbjct: 56  LSLEWNDYNLKWNESEYG 73


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 218 SRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNQNNISRRHFMTT 78
           ++  V+    + +DS  AF+      +AQV    N  N + R   TT
Sbjct: 82  AQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTNNGTNKNMRRLSTT 128


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 303 DTGRSSNELDRQXTELERRGMGLH 374
           D GR+S   D+      RRG+ LH
Sbjct: 7   DAGRASKGQDKHMVHWFRRGLRLH 30


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +2

Query: 476 PXPXPLSPXSPXYSQXXGXPRWAPLTPTAPXXXPAA 583
           P P P S  +P  S     P  AP   T     PA+
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPAS 46


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = +1

Query: 100 LILFWLPFLLTCAIASAAECENATSLSLMIDSLLATYDRES--PPDSKIVVNL 252
           L+ FW  F +   +    +C N    S +   +  T DR    P   +  +N+
Sbjct: 271 LLTFWSAFFIVNVLYICNQCYNTVEESRIFGLVTFTPDRSKFRPSSLRFCLNI 323


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,589
Number of Sequences: 336
Number of extensions: 3772
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25961683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)