Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_G15
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    30   0.032
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.17 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.5  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 29.9 bits (64), Expect = 0.032
 Identities = 27/105 (25%), Positives = 29/105 (27%)
 Frame = +3

Query: 540 PRPPPPXTXGXPXSPPPPPPXRXAXXXPRPPXXPRPXXPXRPXXXRPPPXPXXPRPGXXP 719
           PRPP P        P   P        P+P    RP  P           P   RP   P
Sbjct: 53  PRPPHPRLR-REAEPKAEPGNNRPIYIPQP----RPPHPRLRREAESEAEPGNNRPVYIP 107

Query: 720 XXPXXPGHPXXLPXPXARPXXXXGLXXXXXPXPXPXXXRXPXGXP 854
                P HP     P A P     +       P P   R P   P
Sbjct: 108 QP--RPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEP 150



 Score = 28.7 bits (61), Expect = 0.075
 Identities = 24/81 (29%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
 Frame = +3

Query: 540 PRPPPPXTXGXPXSPPPPPPXRXAXXX-PRPPXXPRPXXPX-RPXXXRP----PPXPXXP 701
           PRPP P       S   P   R      PRPP       P   P   RP     P P  P
Sbjct: 81  PRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 140

Query: 702 RPGXXPXXPXXPGHPXXLPXP 764
           R    P        P  +P P
Sbjct: 141 RLRREPEAEPGNNRPVYIPQP 161


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = +3

Query: 471 PTGGXXXPG-GAXXPPXPXXXXXHPRPPPPXTXGXPXSPPPPP 596
           P GG   P  GA  PP P        PP P   G   + P  P
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/47 (25%), Positives = 15/47 (31%)
 Frame = +3

Query: 186 PLIXTPPXXSXTXXXPPXPQXXXPPXPPXFXNXXPXGXPPPPGGXXG 326
           P+I        +    P P     P  P   +       PPPGG  G
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
 Frame = +3

Query: 498 GAXXP-PXPXXXXXHPR---PPPPXTXGXPXSPPPPPP 599
           GA  P P P      P+   PP P     P  PP  PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 454 PXPRXXQPGXPXXPAGRXXPPXPXXXXXTXAPPXXXPXGPPXXPP 588
           P P+      P  P  R  PP P     +  PP   P GPP  PP
Sbjct: 21  PGPQPSPHQSPQAPQ-RGSPPNP-----SQGPP---PGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/35 (34%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
 Frame = +3

Query: 627 PPXXPRPXX-PXRPXXXRPPPXPXXPRPGXXPXXP 728
           P   P P   P  P    PP     P PG  P  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +2

Query: 674 AAAPXXPXPPXGXXXGXPXXPRTPXXSP 757
           A AP  P P      G P  P  P   P
Sbjct: 413 AGAPMPPIPNMSNMSGMPPLPNMPGSMP 440



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/33 (30%), Positives = 11/33 (33%)
 Frame = +1

Query: 493 PAGRXXPPXPXXXXXTXAPPXXXPXGPPXXPPP 591
           P+     P P       AP    P  P   PPP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
 Frame = +2

Query: 233 PP--PPXXXXTPXPXFXKXPPXGXPPPPXGXXG 325
           PP  P     T    F + PP   PPPP    G
Sbjct: 641 PPIMPRVQNATDTTNFDEYPPDSDPPPPDDISG 673


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 567  GXPXSPPPPP 596
            G P  PPPPP
Sbjct: 1855 GSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,787
Number of Sequences: 438
Number of extensions: 7902
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)