Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_G13
(841 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 44 2e-06
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 43 4e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 40 4e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 40 4e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 36 4e-04
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 36 4e-04
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 36 4e-04
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 36 4e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 36 4e-04
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 36 4e-04
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 36 4e-04
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 36 4e-04
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 35 8e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 35 8e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 35 0.001
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 34 0.002
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 32 0.006
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 29 0.040
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 44.0 bits (99), Expect = 2e-06
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Frame = +2
Query: 95 IASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA---NIRESEST 253
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 254 VRIQADLQMNXIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 385
+ L+ D + W+ E+G T L V SE +W PD+VL N
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYN 111
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 43.2 bits (97), Expect = 3e-06
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 277
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNXIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 379
+ L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 42.7 bits (96), Expect = 4e-06
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Frame = +2
Query: 86 TCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRH---ANIRES 244
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 245 ESTVRIQADLQMNXIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 385
T + + + N D +L WN ++G T V SE +W PD+VL N
Sbjct: 66 IMTTNVWVEQEWN--DYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYN 111
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 39.5 bits (88), Expect = 4e-05
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNX 286
N +++S ++D+LL YD PD V + + +R I E + T + + +
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 385
+D+RL++ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 39.5 bits (88), Expect = 4e-05
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQADLQMNXIDKR 298
+ D LL+ Y+R P LT+ L N++ T + + + N D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWN--DYK 94
Query: 299 LSWNAGEWGCSTWL-VSSERLWRPDVVLLN 385
L WN E+G L V SE +W PD+VL N
Sbjct: 95 LKWNPEEYGGVEMLYVPSENIWLPDIVLYN 124
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 37.9 bits (84), Expect = 1e-04
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Frame = +2
Query: 113 CENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAD 271
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 272 LQMNXIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 385
++ + D +L W+ E+G L V S+ +WRPD+VL N
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYN 115
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 36.3 bits (80), Expect = 4e-04
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNXIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 385
++ E + A L++ +D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 36.3 bits (80), Expect = 4e-04
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNXIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 385
++ E + A L++ +D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 36.3 bits (80), Expect = 4e-04
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNXIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 385
++ E + A L++ +D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 36.3 bits (80), Expect = 4e-04
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNXIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 385
++ E + A L++ +D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 36.3 bits (80), Expect = 4e-04
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNXIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 385
++ E + A L++ +D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 36.3 bits (80), Expect = 4e-04
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNXIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 385
++ E + A L++ +D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 36.3 bits (80), Expect = 4e-04
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNXIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 385
++ E + A L++ +D L WN E+ G ++ +LW+PD+++ N
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 145
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 36.3 bits (80), Expect = 4e-04
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNXIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 385
++ E + A L++ +D L WN E+ G ++ +LW+PD+++ N
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 145
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 35.1 bits (77), Expect = 8e-04
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNXIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ + D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVVLLN 385
W E+G L V S+ +WRPD+VL N
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 35.1 bits (77), Expect = 8e-04
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNXIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ + D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVVLLN 385
W E+G L V S+ +WRPD+VL N
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 34.7 bits (76), Expect = 0.001
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 194 IVVNLTLHLRHANIRESESTVRIQADLQMNXIDKRLSWNAGEW-GCSTWLVSSERLWRPD 370
+V L+LH ++ E + + D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 371 VVLLN 385
+L N
Sbjct: 92 TILYN 96
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 33.9 bits (74), Expect = 0.002
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 191 KIVVNLTL-HLRHANIRESESTVRIQADLQMNXIDKRLSWNAGEWG-CSTWLVSSERLWR 364
K+ VN L ++ N+ E ++ L+ D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 365 PDVVLLN 385
PD+VL N
Sbjct: 111 PDIVLFN 117
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 32.3 bits (70), Expect = 0.006
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 256
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 257 RIQADLQMNXIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 385
L++ D + WN ++G L + RLW+PDV++ N
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYN 114
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 29.5 bits (63), Expect = 0.040
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = +2
Query: 128 SLSLMIDSLLATYDRDSPPD----SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNXID 292
++++++++LL Y+ + P + VV + +R + E + + + + D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 293 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 385
RLS+ S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,887
Number of Sequences: 438
Number of extensions: 2844
Number of successful extensions: 29
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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