Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_G12
         (1166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.94 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.94 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   6.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 20/67 (29%), Positives = 21/67 (31%)
 Frame = +2

Query: 173 KXXPPPSXPPXXXKKKXXXXXXXXXXGGGXXFGXPPPPXXXXFXGGGGGGXXPPXXXXXX 352
           K  PPP  PP    +           G G      PPP         G    PP      
Sbjct: 308 KKRPPPPPPPSRRNR------GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRS-- 359

Query: 353 XPPPPPP 373
            PPPPPP
Sbjct: 360 APPPPPP 366



 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
 Frame = -2

Query: 457 PTPPKPFXF----PRVGXKKREFXPPPXXXXXGGGGGGXXXXXXXGXXXPPPPPP 305
           P PP P       P +G        PP          G       G   PPPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 318 PPPPPXKXXXXGGGGXPKXXPPP 250
           PPPPP      G G  P   PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -2

Query: 334 GXXXPPPPPPXKXXXXXGGGXPKXXXPPP 248
           G   PPPPPP       G G P    PPP
Sbjct: 759 GGPPPPPPPPG----VAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +2

Query: 278 PPPXXXXFXGGGGGGXXPPXXXXXXXPPPPPP 373
           P P      GG      PP       PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 307 GGGGGGXXXPXXXXXXPPPPPPPXXXXXGGG 399
           GG       P      PPPPPPP      GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 26.6 bits (56), Expect = 6.6
 Identities = 17/52 (32%), Positives = 17/52 (32%)
 Frame = -2

Query: 460 SPTPPKPFXFPRVGXKKREFXPPPXXXXXGGGGGGXXXXXXXGXXXPPPPPP 305
           SP PP P              PPP     GG           G   PPPPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIM-GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +2

Query: 269 GXPPPPXXXXFXGGGGGGXXPPXXXXXXXPPPPP 370
           G PPPP      G  G G  PP       PPPPP
Sbjct: 759 GGPPPPPPP--PGVAGAGPPPP-------PPPPP 783


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 355 PPPPPPPXXXXXGGG 399
           PPPPPPP      GG
Sbjct: 946 PPPPPPPPLVSAAGG 960


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,208
Number of Sequences: 5004
Number of extensions: 37147
Number of successful extensions: 348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)