Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_G12
         (1166 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   6.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 355  PPPPPPP 375
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 355  PPPPPPP 375
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 11/41 (26%), Positives = 15/41 (36%)
 Frame = +3

Query: 603 PGXEIPXGXPXPPXGNPRXXKNXKGAPGGXXKXGXLEXXPP 725
           PG   P   P P   +PR  +  +  PG        +  PP
Sbjct: 98  PGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 138



 Score = 23.0 bits (47), Expect = 5.2
 Identities = 11/41 (26%), Positives = 15/41 (36%)
 Frame = +3

Query: 603 PGXEIPXGXPXPPXGNPRXXKNXKGAPGGXXKXGXLEXXPP 725
           PG   P   P P   +PR  +  +  PG        +  PP
Sbjct: 124 PGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 164


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +1

Query: 316  GGGXXXPXXXXXXPPPPPP 372
            G     P      PPPPPP
Sbjct: 1846 GSARNIPVSGSPEPPPPPP 1864



 Score = 22.6 bits (46), Expect = 6.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 333  GGXXPPPPPP 304
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,036
Number of Sequences: 438
Number of extensions: 7941
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39644829
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)