Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_G08
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0059 - 394001-394708                                             30   2.0  
09_02_0327 - 7284829-7284889,7284946-7286126                           29   4.6  
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505...    29   6.1  
02_03_0308 - 17556078-17556216,17556800-17556963                       29   6.1  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   8.0  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   8.0  

>08_01_0059 - 394001-394708
          Length = 235

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/58 (29%), Positives = 17/58 (29%)
 Frame = +2

Query: 593 PXXRXXPPSXPXGXRXGPXPXFRRPXSXXRAXXAXPXPXAXXXXPPXRXXXXAPXEPP 766
           P     PP  P      P P  R P        A P P      PP      AP  PP
Sbjct: 11  PPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPPAPVPPP 68


>09_02_0327 - 7284829-7284889,7284946-7286126
          Length = 413

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +1

Query: 571 GSXRXATPXXPPXPPQXPRGXXXRXXSXLSXAXILXPXRXXXPSPPGKXXXP 726
           G+     P  PP PP  PRG   R    +S   +  P     PSPP     P
Sbjct: 50  GAHPPPPPPPPPPPPPPPRG--RRYYRRVSGDDLDVPSCSSSPSPPSDEENP 99


>08_02_0743 -
           20647440-20647927,20647997-20648426,20650127-20650570,
           20650639-20650692
          Length = 471

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 393 GXXXPRRWXXXRLXPVPRQPSTKRSRGXPAKVVQPHSPCVP 271
           G   P +       P P +PS+ R RG P K   P S  +P
Sbjct: 90  GRGRPPKPRDPNAPPPPPKPSSPRPRGRPPKSKDPISDAIP 130


>02_03_0308 - 17556078-17556216,17556800-17556963
          Length = 100

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 658 KGGXGXAXXAXGXAGGXXAXXWVLPXXXNP 569
           +GG G A  A G  GG     W+LP    P
Sbjct: 25  RGGMGAAAAAAGAGGGDDGGPWLLPSLSPP 54


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 42  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 182
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/60 (26%), Positives = 18/60 (30%)
 Frame = +1

Query: 586 ATPXXPPXPPQXPRGXXXRXXSXLSXAXILXPXRXXXPSPPGKXXXPXXSXGXXRPXXTP 765
           A+P  PP PP  P             A    P +   P PP K   P        P   P
Sbjct: 309 ASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPP 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,772,983
Number of Sequences: 37544
Number of extensions: 337878
Number of successful extensions: 1144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)