Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_G08
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    31   0.010
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.1  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 31.5 bits (68), Expect = 0.010
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +1

Query: 79  CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 243
           C++ TS S +      L   YDRD  P+ K    ++  L ++H N+ E   TV     L+
Sbjct: 28  CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87

Query: 244 MNXIDKRLSWNA 279
           +      L+W +
Sbjct: 88  LMWEQSHLTWKS 99


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 56  QVRRNGNQNNISRRHFI 6
           ++ RNG  N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 56  QVRRNGNQNNISRRHFI 6
           ++ RNG  N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 56  QVRRNGNQNNISRRHFI 6
           ++ RNG  N + RRH I
Sbjct: 218 RIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 56  QVRRNGNQNNISRRHFI 6
           ++ RNG  N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,481
Number of Sequences: 438
Number of extensions: 2742
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)