Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_G06
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    29   1.1  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    28   1.9  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   4.4  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    26   5.9  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 442  VQLCHTTEVRFLHKDPKLAV-FPVTTL*ND 356
            + LCH   +  L  DPKLAV FP  ++ ND
Sbjct: 1109 IALCHNKGIDVLRLDPKLAVGFPSPSVLND 1138


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 621 QGSFQAPQSSQSVHDHNQPYH 683
           + S+ +P SS +  +HN PYH
Sbjct: 49  RSSYDSPSSSTNSKEHNSPYH 69


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 358 DGQCLAYNTTHYRDHFVQESWVRVSLGPSRDTLER 254
           DG+ ++Y   HY + +++   + V+  PS   LER
Sbjct: 859 DGEAISYAVLHYLNQYIKSYLLFVTHFPSLGILER 893


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 193 ILRN*KKKXKRPHVLELQVAAALEYPSRGPSLR--VPSFLVQSGPYSESYYKLG 348
           IL   K+   +P+VLEL +   L+   R   LR  + SFL ++ P    Y+ +G
Sbjct: 174 ILNADKETDLKPYVLELAMTVVLDIEFRNRLLRLLLSSFLTETEP---DYFSVG 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,944
Number of Sequences: 5004
Number of extensions: 54633
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)