Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_G05
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   223   2e-59
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   223   3e-59
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    26   5.8  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   7.7  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  223 bits (545), Expect = 2e-59
 Identities = 117/220 (53%), Positives = 140/220 (63%), Gaps = 2/220 (0%)
 Frame = +3

Query: 126 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 305
           S+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESW
Sbjct: 9   SIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67

Query: 306 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 485
           GTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH               
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSA 127

Query: 486 XXXXXXXXXXQARGHIIEKIPSFPWL*PTKSRD-QQTKQAVIFLXRLKAWSDILKVYKSQ 662
                      ARGH IE+IP  P +     +  Q+TK+AV  L  +KA+ D++KV  S+
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSR 187

Query: 663 RLRAGKGKCATVVVSSVRGPHNL-QQG*GLNPAFRXIPGV 779
           +LRAGKGK         RGP  +  +  G+  AFR IPGV
Sbjct: 188 KLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGV 227


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  223 bits (544), Expect = 3e-59
 Identities = 116/220 (52%), Positives = 140/220 (63%), Gaps = 2/220 (0%)
 Frame = +3

Query: 126 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 305
           S+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESW
Sbjct: 9   SIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67

Query: 306 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 485
           GTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH               
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASA 127

Query: 486 XXXXXXXXXXQARGHIIEKIPSFPWL*PTKSRD-QQTKQAVIFLXRLKAWSDILKVYKSQ 662
                      ARGH IE+IP  P +     +  Q+TK+AV  L  +KA+ D++KV  S+
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSR 187

Query: 663 RLRAGKGKCATVVVSSVRGPHNL-QQG*GLNPAFRXIPGV 779
           +LRAGKGK         RGP  +  +  G+  AFR IPGV
Sbjct: 188 KLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGV 227


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 657 SQRLRAGKGKCATVVVSSVRGPHNL 731
           +QR+ +G+G CA    + +RGP+ +
Sbjct: 305 TQRVNSGEGPCAPPSYAELRGPNTI 329


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -1

Query: 119 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 42
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,811
Number of Sequences: 5004
Number of extensions: 56699
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)