Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_G03
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 72 8e-14
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 32 0.082
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 32 0.082
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 30 0.44
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 29 0.76
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 28 1.3
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 27 2.3
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 4.1
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 26 5.4
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 26 5.4
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 26 5.4
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 26 5.4
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 9.4
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 72.1 bits (169), Expect = 8e-14
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Frame = +3
Query: 51 LLCTASPEKTIKVFDVVNFDMINMISIDFEPYRGEWVHSAGDPISALAVSDRNTNKIHVY 230
L T + +K++KVFDV + D++N+I ++F P +S S +AVS + I +
Sbjct: 104 LFITGADDKSLKVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSSAESPLIFFF 163
Query: 231 DGTQASGTPLHTFETLHQTAVAVIKYNPVFETAVSVDKAGIVEYWTGPKHEYNFPKTVR- 407
+ + G L+T + H V ++Y + +S+D G+VEYW+ P+ + P T
Sbjct: 164 E-SGGDGEVLYTVKK-HTAPVHCLRYLSTLDCFLSIDIGGMVEYWS-PEEPFQKPDTAEL 220
Query: 408 FQSKLDTDLYXFVKKQNL 461
F K TDLY F K++++
Sbjct: 221 FNMKSQTDLYIFKKQKSV 238
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 32.3 bits (70), Expect = 0.082
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 12 APISHVAANSTGTLLCTASPEKTIKVFDVVNFDMINMISIDFEPYRGEWVHS-AGDPISA 188
+P+ VA + TLL A K I ++DV++ D + + W+ + A +P+
Sbjct: 188 SPVRSVAFSPGSTLLAAAGDSKMITIYDVLSGDQVGQLR-----GHAAWIFAVAFNPVGD 242
Query: 189 LAVSDRNTNKIHVYD 233
L +S KI ++D
Sbjct: 243 LLLSADVEGKIKIWD 257
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 32.3 bits (70), Expect = 0.082
Identities = 11/28 (39%), Positives = 23/28 (82%)
Frame = +3
Query: 15 PISHVAANSTGTLLCTASPEKTIKVFDV 98
P+S ++ NS+G+LL + S +KT++++D+
Sbjct: 469 PVSSLSFNSSGSLLASGSWDKTVRIWDI 496
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 29.9 bits (64), Expect = 0.44
Identities = 23/98 (23%), Positives = 46/98 (46%)
Frame = +3
Query: 18 ISHVAANSTGTLLCTASPEKTIKVFDVVNFDMINMISIDFEPYRGEWVHSAGDPISALAV 197
+S +A +S G L A +++++ + N F + G+ A PI+ +
Sbjct: 204 VSSLAYSSDGGFLAIARVNGFVEIWNRKTKN--NRCDYKFH-HDGDISCMAWSPINWTLL 260
Query: 198 SDRNTNKIHVYDGTQASGTPLHTFETLHQTAVAVIKYN 311
+T I+VY T++ +HT + +HQ V +++N
Sbjct: 261 VGGSTGNIYVYRRTKSMMRRVHTIKKVHQEQVCGLEWN 298
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 29.1 bits (62), Expect = 0.76
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Frame = +3
Query: 42 TGTLLCTASPEKTIKVFDVVNFDMINMISIDFEPYRGEWVHSAGDPISALAVSDRNTNKI 221
TG+ L + S +KT++V+++ + I + WV+ G P + + N I
Sbjct: 200 TGSFLLSGSRDKTVQVWNIKKRSAVRTIPVFHSVEAIGWVN--GQPEEKILYTAGEGNLI 257
Query: 222 HVYDGTQASGTPLHT-FETLHQTAVAVIKYNPVFE-TAVSV 338
+D SG+ L +T H A+I+ P E T +SV
Sbjct: 258 LAWD--WKSGSRLDPGVDTTHSETNAIIQVVPFSENTLLSV 296
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Frame = +3
Query: 15 PISHVAANSTGTLLCTASPEKTIKVFDVVNFDMIN--------MISIDFEPYRGEWVHSA 170
P+ + + T TLL T E +KV+D+ + + + ++ F ++ WV ++
Sbjct: 105 PVITMTIDPTNTLLATGGAEGLVKVWDIAGAYVTHSFRGHGGVISALCFGKHQNTWVLAS 164
Query: 171 GDPISALAVSDRNTNK-IHVYDG 236
G S + + D N+++ + V++G
Sbjct: 165 GADDSRVRLWDLNSSRSMAVFEG 187
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 169 AECTHSPRYGSKSIDIMLIISKLTTSNTFIVFSGD 65
++C+HSP YGS I + + K +TS + +++ D
Sbjct: 867 SKCSHSPIYGSNLIRLAEKLPKHSTSIDYTLYAKD 901
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 27.5 bits (58), Expect = 2.3
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Frame = +3
Query: 42 TGTLLCTASPEKT-IKVFDVVNFDMI---NMISIDFEPYRGEWVHSAGDPISALAVSDRN 209
T T +C + +VF+ VN + NM+ D++ YR + +H AG LAV ++
Sbjct: 706 TLTTMCFGGDDNCGCQVFEDVNSSLEYCENMLLDDYDVYRTKLLHKAGYS-HTLAVPGKH 764
Query: 210 TNKIHVYDGTQASGTPLHTFETLHQTAVAVIK 305
I + + S +P H + L Q A++ +K
Sbjct: 765 KQNISMAE--TFSPSPRH--DLLRQVAMSSVK 792
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 27 VAANSTGTLLCTASPEKTIKVFDVVNFDMI 116
++ + G L +AS +KT +FDVVN +
Sbjct: 219 ISYSHNGRYLASASKDKTAIIFDVVNLKRV 248
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 5.4
Identities = 25/118 (21%), Positives = 55/118 (46%)
Frame = +3
Query: 12 APISHVAANSTGTLLCTASPEKTIKVFDVVNFDMINMISIDFEPYRGEWVHSAGDPISAL 191
API V + G TAS ++T +++DV + + + F ++ + + P +A
Sbjct: 446 APIWDVQFSPFGYYFATASHDQTARLWDVEHAAPLRV----FVGHQNDVDCVSFHPNAAY 501
Query: 192 AVSDRNTNKIHVYDGTQASGTPLHTFETLHQTAVAVIKYNPVFETAVSVDKAGIVEYW 365
+ + + ++D + GT + F H + V+ + + + S D++GI++ W
Sbjct: 502 LATGSSDHTTRMWD-VRTGGT-VRVFNA-HHSPVSALCMSADGLSLASADESGIIKVW 556
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 244 ACVPSYT*ILFVFLSETAKAEMGSPAECTHSPRYG 140
AC P T + F+FL +TA + EC HS G
Sbjct: 492 ACSPK-THVSFLFLLKTATQLLNKLVECLHSSDLG 525
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 5.4
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +3
Query: 18 ISHVAANSTGT-LLCTASPEKTIKVFDVVN-FDMINMI-SIDFEPYRGEWVHSAGDPISA 188
I+ VA N LL TAS +KT+ ++D+ N + ++ + + E Y EW +PI A
Sbjct: 284 INAVAINPFNDYLLATASADKTVALWDLRNPYQRLHTLEGHEDEVYGLEW-SPHDEPILA 342
Query: 189 LAVSDR 206
+ +DR
Sbjct: 343 SSSTDR 348
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 267 TCAAECPKLACRRTRESYLCFCPRQLK 187
T EC C R R Y CPR+L+
Sbjct: 372 TLLTECYSSTCSRNRLCYSISCPRRLE 398
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 9 LAPISHVAANSTGTLLCTASPEKTIKVFDVVNFDMINMISIDFEPYRG-EW 158
LA S ++NS LL TAS + T ++FD I + + E R +W
Sbjct: 234 LAVRSIKSSNSAHDLLATASYDMTSRIFDPEQHSCIRKVDLHSEFVRDVDW 284
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 15 PISHVAANSTGTLLCTASPEKTIKVFDVVN 104
PI V+ ++ GTL TAS + +++DV++
Sbjct: 182 PIISVSISADGTLCATASYDGMARIWDVLS 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,165
Number of Sequences: 5004
Number of extensions: 39076
Number of successful extensions: 140
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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