Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_G03
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    24   1.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    24   1.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   4.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.9  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 280 CRVSNVCSGVPEACVPSYT*ILFVFLSETA 191
           CR  + CS  P A   SY  + F+++  +A
Sbjct: 113 CRNFSTCSSHPTAAFISYGTLFFIYVQPSA 142


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 280 CRVSNVCSGVPEACVPSYT*ILFVFLSETA 191
           CR  + CS  P A   SY  + F+++  +A
Sbjct: 114 CRNFSTCSSHPTAAFISYGTLFFIYVHPSA 143


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 183 SALAVSDRNTNKIHVYDGTQASGTPLHT 266
           SAL   D   N +H+ + T A G  + T
Sbjct: 259 SALVSKDSKFNMVHIQNSTLAGGVAIGT 286


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 182 LSFSCLGQKHK*DSRVRR 235
           ++F CL + +K DSRV R
Sbjct: 369 ITFRCLEENNKIDSRVTR 386


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/41 (21%), Positives = 20/41 (48%)
 Frame = -1

Query: 139 SKSIDIMLIISKLTTSNTFIVFSGDAVQSKVPVLFAATWEI 17
           ++ + ++  +  L   N+ + FS      K+PV  A  W++
Sbjct: 525 ARLLSVLTELRTLGNQNSEMCFSLKFKNKKLPVFLAEIWDV 565


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 366 TGPKHEYNFPKTVRFQSKLDTDLYXFV-KKQNLSXGAW 476
           T P H +  P     +++LDT +Y  + +K   + G W
Sbjct: 536 TVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGW 573


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 208 FLSETAKAEMGSPAECTHSPRYGSKSIDIMLIISK 104
           F S   +   GS  EC  SPR  + S  + ++  +
Sbjct: 359 FRSVVVQKRNGSMIECNISPRSSADSCQVGIMAQR 393


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 19/77 (24%), Positives = 30/77 (38%)
 Frame = +3

Query: 9   LAPISHVAANSTGTLLCTASPEKTIKVFDVVNFDMINMISIDFEPYRGEWVHSAGDPISA 188
           L P+S+V A       C+     ++  F VVN  M  + +   + Y  E +  A D    
Sbjct: 267 LPPVSYVKAIDVWMSSCSVFVFLSLMEFAVVNNYMGPVATKAMKGYSDEDLREAIDEFKT 326

Query: 189 LAVSDRNTNKIHVYDGT 239
              +D   N+  V   T
Sbjct: 327 PMRNDSERNRSPVRPAT 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,996
Number of Sequences: 438
Number of extensions: 2618
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)