Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_F23
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    27   4.1  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    26   7.2  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   9.5  

>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -1

Query: 295 GVGPGASDTLSRIGRQ*VSISSSECP---TPPHAPSITSAAALLRHFL 161
           G G    + +SR+ +   S++S+  P   +PP APS TS  A+  +F+
Sbjct: 254 GAGTVFYNPVSRLTQPLPSLASTASPQQVSPPAAPSTTSGEAIPENFV 301


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 55  RLQGGETICTMIGQLV---PTKPVDKSAGQSTRVCRNCTRSVAAE 180
           R QGG+ I +M+GQL+    T+  DK  G+  +V         AE
Sbjct: 250 RPQGGQDIMSMMGQLMKPKKTEITDKLRGEINKVVNKYIEQGIAE 294


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 418 PGPDGIRSGSVAFGSCA 468
           PGP+G+  GS+ +GS A
Sbjct: 894 PGPEGVYVGSILYGSPA 910


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,786
Number of Sequences: 5004
Number of extensions: 50112
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)