Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_F23
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0138 + 1657028-1657489 33 0.35
03_05_0674 + 26619579-26619658,26620020-26620746,26620999-266214... 31 1.1
01_06_1625 + 38729803-38731115,38731202-38731391,38731472-387315... 29 3.3
07_03_1257 - 25241194-25242018 28 7.6
12_02_1215 + 27070164-27070302,27070308-27071098 28 10.0
10_02_0060 - 4808506-4808535,4808564-4809588,4810125-4810292,481... 28 10.0
08_02_1621 - 28304013-28304582 28 10.0
07_03_0183 - 14822973-14823139,14823232-14823627,14823861-148240... 28 10.0
04_04_0915 - 29385926-29385952,29386069-29386285,29386367-293866... 28 10.0
>10_01_0138 + 1657028-1657489
Length = 153
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 204 ACGGVGHSLEEMETYWRPILERVSDAPGPTPEALHALXRAEWHGG 338
A G GH + +E +R + E VS P LHAL R +HGG
Sbjct: 93 ARGEEGHDV--VEDSFREVAEPVSTGGAPRGRGLHALARRSFHGG 135
>03_05_0674 +
26619579-26619658,26620020-26620746,26620999-26621486,
26621746-26621902,26621975-26621998
Length = 491
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 243 SPSPRASVRHPHTRHRSPQLLL 178
+PSPR+S PH R PQLLL
Sbjct: 299 TPSPRSSFSRPHRRQGRPQLLL 320
>01_06_1625 +
38729803-38731115,38731202-38731391,38731472-38731504,
38731582-38732199,38732304-38733011
Length = 953
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 177 RAAAEVIDGACGGVGHSLEEMETYWRPILERVSDAPGPTPE--ALHALXRAEWHGGNRDY 350
R +VIDG GG+G + E + + D PG T E +HAL W+ G +
Sbjct: 387 RVVKQVIDGGGGGIGRARAIAELVSDERVVALFDGPGNTHERGTMHALL---WNCGTEHF 443
Query: 351 TQLWKPISVEXIKASPL 401
S + I+ S L
Sbjct: 444 RAKNYDTSADLIERSML 460
>07_03_1257 - 25241194-25242018
Length = 274
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/82 (28%), Positives = 34/82 (41%)
Frame = -2
Query: 375 PRSVSTAGCSRDCPRATPHAXGREELPV*AQVHRTLSRG*VANRSPSPRASVRHPHTRHR 196
PR + A R P GR+ P A + + R +A+ + + R R H+R R
Sbjct: 37 PRPMPQAVRHRSLQPPAPDVAGRDSTPSPASMTPSRCRTTLASTTTTRRRPPRRLHSRPR 96
Query: 195 SPQLLLCCDTSCTVPAHARTLP 130
P+ T+ T P R LP
Sbjct: 97 HPR---GRTTASTTPQPPRPLP 115
>12_02_1215 + 27070164-27070302,27070308-27071098
Length = 309
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 358 CGNRSRWXKSRPPRFD-WXTSPGPDG-IRSGSVAFGSCAXEGGNVQC 492
CG SRW + R P + TS G R GS A GS GG+ C
Sbjct: 156 CGGWSRWQRRRRPFVEAVVTSAARRGWRRRGSWALGSSGCGGGDRVC 202
>10_02_0060 -
4808506-4808535,4808564-4809588,4810125-4810292,
4811202-4811652
Length = 557
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Frame = +1
Query: 316 GVRSGTGAIATTPSCGNRSRWXKSRPPRFDWXTSPGPDGIRSGSVAFGSCAXEG------ 477
G RS G A + G+R+R ++ PP D PG D + G + CA G
Sbjct: 110 GGRSRPGKKAVAATAGDRARHPEAPPP--DGSGLPGLDPLAGGDI--DECALPGIMSNCS 165
Query: 478 GNVQCMDXPGKY 513
N C++ PG +
Sbjct: 166 FNSVCVNRPGGF 177
>08_02_1621 - 28304013-28304582
Length = 189
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 361 GNRSRWXKSRPPRFDWXTSPGPDGIRSGSVAFGSCAXEGGNV 486
G RW P + T P D +R GSV S GG+V
Sbjct: 54 GGGDRWQIGSPRKASAATWPREDFVRQGSVEQNSVEGVGGDV 95
>07_03_0183 -
14822973-14823139,14823232-14823627,14823861-14824005,
14824174-14824380
Length = 304
Score = 27.9 bits (59), Expect = 10.0
Identities = 20/83 (24%), Positives = 35/83 (42%)
Frame = +3
Query: 99 SAHKTSRQKRRAEYARVQELYKKCRSRAAAEVIDGACGGVGHSLEEMETYWRPILERVSD 278
+ H+ + R E +R Y++ R+ A E +G+ ++ E W P D
Sbjct: 153 NCHELTIPLRTIEESRAGGTYRETRNMARNEQ-EGSSSST--PMQMYEAGWEP----TGD 205
Query: 279 APGPTPEALHALXRAEWHGGNRD 347
APG T H++ + W + D
Sbjct: 206 APGWTQAPRHSIGVSSWASASED 228
>04_04_0915 -
29385926-29385952,29386069-29386285,29386367-29386622,
29386745-29387072,29387157-29387587,29388014-29388163,
29388212-29388398,29388709-29388750,29389007-29389555,
29389778-29390032
Length = 813
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Frame = +1
Query: 352 PSCGNRSRWXKSRPPRFDWXT--------SPGPDGIRSGSVAFGSCAXEGG 480
PSCG+ RW + W + GPDG G+ +G + EGG
Sbjct: 9 PSCGSGWRWRGDSHHKALWSSLDDGGDAEGSGPDGPADGAATWGRRSSEGG 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,707,158
Number of Sequences: 37544
Number of extensions: 486844
Number of successful extensions: 1843
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1843
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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