Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_F23
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77654-3|CAB01129.1|  340|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6...    29   5.1  
AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threon...    29   5.1  
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    28   9.0  
Z71264-3|CAA95827.1|  325|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U41277-2|AAA82473.1|  274|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>Z77654-3|CAB01129.1|  340|Caenorhabditis elegans Hypothetical
           protein C50B8.3 protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 269 SLEDRSPIGLHLLERVSDTPTRAIDHLSCCSAATLLVQFLHTRVLCPALLSTGF 108
           +LED S IG+ L++R+       ID++   +  T +  F +     P   + GF
Sbjct: 287 NLEDTSSIGIVLMDRIDGDFRLEIDYIGVYNDTTHVEDFAYETYTLPVFNTHGF 340


>U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6
           protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 143 ACAGTVQEVXXXXXXXGDRWRVWGCRTLARGDG 241
           AC   V+EV        +    WGC TL RG G
Sbjct: 90  ACYHAVEEVYNKAEKRMETLHKWGCATLERGSG 122


>AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threonine
           kinase SMA-6 protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 143 ACAGTVQEVXXXXXXXGDRWRVWGCRTLARGDG 241
           AC   V+EV        +    WGC TL RG G
Sbjct: 90  ACYHAVEEVYNKAEKRMETLHKWGCATLERGSG 122


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
 Frame = -3

Query: 485 TFPPSXAQDPNATEPERIPSGPGEVXQSKRGGLDXFHRDR-------FPQLGVVAIAPVP 327
           T PP+    P  T     P  P    QS    L   HR         FP +G+VA AP+P
Sbjct: 419 TAPPAPTSAPVPTPRHVAPLAPTVAQQSH---LTPNHRHAAQQKKHLFPVVGIVATAPIP 475

Query: 326 LRT 318
           ++T
Sbjct: 476 VQT 478


>Z71264-3|CAA95827.1|  325|Caenorhabditis elegans Hypothetical
           protein K07G5.4 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 238 ISSSECPTPPHAPSITSAAALLRHFLYSSCTRA 140
           ISSSE   PP  PSIT   ++ R  L +S + A
Sbjct: 221 ISSSEASPPPPRPSITRTESVPRSILKNSSSFA 253


>U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical
           protein ZK328.4 protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 296 RCRPRCIGHSLEDRSPIGLHLLERVSDTPTRAIDHLSCCSAATLLVQFLH 147
           +CR    G+S  + SP+     ERV DT    + H   C AAT +V  LH
Sbjct: 333 QCRNHSNGNSTVEMSPVVCTTAERVRDT----LIH-ELCHAATWVVDRLH 377


>U41277-2|AAA82473.1|  274|Caenorhabditis elegans Hypothetical
           protein C06E4.6 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 203 AIDHLSCCSAATLLVQFLHTRVLCPALLSTGF 108
           A+D  S C+A  L+ + +   V+ P  +STGF
Sbjct: 168 ALDQYSRCAAIDLISEGIRINVVQPGFVSTGF 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,518,254
Number of Sequences: 27780
Number of extensions: 339848
Number of successful extensions: 1055
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)