Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_F22
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.43 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   0.99 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   1.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +1

Query: 448 APPPXXKKPPLXXKKXKXXXXPXXXXPXXGGXXPPPPPPP 567
           AP P    PP           P    P   G  PPPPPPP
Sbjct: 745 APAPIPVPPPAPIM---GGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect(2) = 0.99
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 538 GXXPPPPPPP 567
           G  PPPPPPP
Sbjct: 7   GNPPPPPPPP 16



 Score = 23.8 bits (49), Expect(2) = 1.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 547 PPPPPPP 567
           PPPPPPP
Sbjct: 24  PPPPPPP 30



 Score = 22.6 bits (46), Expect(2) = 1.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 535 GGXXPPPPPP 564
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16



 Score = 21.4 bits (43), Expect(2) = 0.99
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 547 PPPPPPPXXK 576
           PPPPPP   K
Sbjct: 25  PPPPPPGYVK 34


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 535 GGXXPPPPPPP 567
           GG  PPPPPPP
Sbjct: 303 GGLPPPPPPPP 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,445
Number of Sequences: 5004
Number of extensions: 18295
Number of successful extensions: 197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)