Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_F21
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    70   4e-13
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    70   4e-13
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.23 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.8  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 28/69 (40%), Positives = 45/69 (65%)
 Frame = +1

Query: 70  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKXXXXX 249
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEK     
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 250 XXXXXIXNP 276
                I NP
Sbjct: 65  RVIATIENP 73



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = +2

Query: 341 TGATPIXGRFHPGAFINQIQXXFRETPFLIVLDP 442
           TGAT I GRF PG F N I   +RE   ++V DP
Sbjct: 96  TGATAIAGRFTPGNFTNYITRTYREPRLIVVTDP 129



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +3

Query: 273 PADVFVISSRXFGXRAVLKFA 335
           PADV V+S+R +G RAVLKFA
Sbjct: 73  PADVCVVSTRTYGHRAVLKFA 93


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 29/65 (44%), Positives = 43/65 (66%)
 Frame = +1

Query: 82  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKXXXXXXXXX 261
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEK         
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 262 XIXNP 276
            I NP
Sbjct: 70  TIENP 74



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = +2

Query: 341 TGATPIXGRFHPGAFINQIQXXFRETPFLIVLDP 442
           TGAT I GRF PG F N I   +RE   +IV DP
Sbjct: 97  TGATAIAGRFTPGNFTNYITRTYREPRLIIVTDP 130



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = +3

Query: 273 PADVFVISSRXFGXRAVLKFA 335
           PADV VISSR +G RAVLKFA
Sbjct: 74  PADVCVISSRPYGHRAVLKFA 94


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 586 PXXXXGXGXXPPXPPXXXGGXXXPPPPP 669
           P    G    PP PP   G    PPPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 619 PXPPXXXGGXXXPPPPPXKXXGGXXXP 699
           P P    GG   PPPPP     G   P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 616 PPXPPXXXGGXXXPPPPPXKXXGGXXXP 699
           P  PP    G   PPPPP    G    P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 675 FXGGGGGXXXPPXXPGGXXG 616
           F G GGG   PP  PGG  G
Sbjct: 190 FGGFGGGSGGPPPGPGGFGG 209


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 601 GXGXXPPXPPXXXGGXXXPPPPP 669
           G    PP PP        PPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,763
Number of Sequences: 5004
Number of extensions: 47305
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)