Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_F19
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    32   0.46 
01_06_0456 + 29521282-29522064                                         30   1.8  
03_05_0934 - 28935728-28935859,28936000-28936122,28936172-289362...    29   4.3  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   5.6  
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399     28   9.8  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 7    GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLXELDS 159
            G+  PR +  D  EW N  PT+   ++ + +PRE     Q+ K  +  L+S
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFILNS 1443


>01_06_0456 + 29521282-29522064
          Length = 260

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = -2

Query: 401 WQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 282
           W+C  P +G+RG  +RRR  P    S R  R    +T+RP + S A
Sbjct: 13  WRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58


>03_05_0934 -
           28935728-28935859,28936000-28936122,28936172-28936284,
           28936363-28936430,28936517-28936600,28936937-28936980,
           28937061-28937204,28937518-28937582,28937722-28937814,
           28938132-28938262,28938375-28938394,28938904-28938987,
           28939157-28939330,28940106-28940195,28940293-28940364,
           28941318-28941365,28941458-28941570,28942786-28942849,
           28942943-28943016,28943162-28943201
          Length = 591

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 244 ESSGFSATIARNDLPLMLHLSCLLTMPD*SQAQXGSSFPADSPKPVP 104
           + +GFS TI R+D  ++  L      P       G+  PA  P PVP
Sbjct: 301 DMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVP 347


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 337 TTLHAWNETPCARRYY 290
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
          Length = 146

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = +1

Query: 304 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCXXGSLTGAVHLSKNNAGVLRPAXRGQKP 483
           R +   +R E    G +RR   L  D +RG+   G    A H     AG    + RG KP
Sbjct: 59  RCIAEGRREEEEEVGRSRRGKDLDLDDMRGY---GET--ATHHGLRLAGREEVSPRGGKP 113

Query: 484 RVEQKGK 504
           RV+  G+
Sbjct: 114 RVDNGGR 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,177,743
Number of Sequences: 37544
Number of extensions: 390619
Number of successful extensions: 1061
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)