Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_F16
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.013
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.21 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +3

Query: 546 PXXGGXPPPPPPXXKKXQXPPPXP 617
           P  GG PPPPPP       PPP P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 567 PPPPPXXKKXQXPPPXPXXXGXGXXXP 647
           PPP P       PPP P   G G   P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 546 PXXGGXPPPPPPXXKKXQXPPPXP 617
           P     PPPPPP  +    PPP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 29.1 bits (62), Expect = 0.84
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 555 GGXPPPPPPXXKKXQXPPPXPXXXG 629
           G  PPPPPP   +    PP P   G
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 512 PPXXXXGXXPPXGXPPPPP 456
           PP    G  PP   PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = +1

Query: 376 GAPPPXGXGGXFXLXXXGXKXXFFXXXGGGGGXPXGGXXPXXXWGG 513
           G PPP G GG       G +       GG GG P G       +GG
Sbjct: 198 GGPPP-GPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 609 GGGXXFFXXXGGGGGXPPPXXG 544
           GGG   F   GGG G PPP  G
Sbjct: 187 GGG---FGGFGGGSGGPPPGPG 205


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 564 PPPPPPXXKKXQXPPP 611
           PPPPPP  ++ +  PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,452,261
Number of Sequences: 5004
Number of extensions: 21081
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)