Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_F15
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     28   1.8  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   4.2  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   7.3  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.7  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   9.7  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   9.7  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   9.7  

>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 416 SLPTRTSPRCDAGSARSQSELFNDTSQS 499
           S+PT TSP  +  + RS + + N+T QS
Sbjct: 231 SVPTTTSPNNENNALRSTANVINNTRQS 258


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 20  QDILPGCIFVRQVAARALSECVRVKIKSTPSNTSTTLNGPLSFVS 154
           + I+  C FVR    +++  C   K          T+NG LSF S
Sbjct: 132 EGIVTRCSFVRPKVIKSVHYCEATKRHHFKQYADATMNGGLSFQS 176


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = +2

Query: 317 PSNRNTPL---LHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFND 487
           P +RN P+   + G       T  +      P+  +S+   +SP   AG   + S LF+ 
Sbjct: 74  PHSRNPPIFEAIQGEQPSDIDTLNLKKVKSGPTSPSSIDRLSSPNAKAGDILA-SSLFSS 132

Query: 488 TSQSPTRRR 514
            S   T RR
Sbjct: 133 GSPPDTTRR 141


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 470 SELFNDTSQSPTRRRALXQVQPERGGSNIGSPCWRRGLV 586
           S +++ TS SP  R      +    GS+ GSP WR GL+
Sbjct: 714 SSIYSSTS-SPYIRDQYFLNRMLTNGSHNGSPSWRDGLL 751


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 428 RTSPRCDAGSARSQSELFNDTSQSPTRRRALXQVQPERGGSN 553
           RT P     S  S+SEL N+T+   +RR  L ++  +R G N
Sbjct: 16  RTLPALHGSSFSSRSELDNNTNSKISRR--LRELVCQRMGEN 55


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 305 PLPHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPR 442
           PLP+PSN N  + H +      +R+          + S  TR S R
Sbjct: 75  PLPNPSNNNDNIFHPQVHSSFHSRSASRQRRRSGLSRSNATRYSRR 120


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 389 TTEHPSGATSLPTRTSPRCDAGSARSQSELFNDT 490
           TT  P+  T+  TRT+PR  A +  S     N T
Sbjct: 149 TTSTPTTTTARTTRTTPRPTATTNTSNQSTSNST 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,007
Number of Sequences: 5004
Number of extensions: 59333
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)