Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_F15
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 34 0.12
03_05_0847 + 28186873-28188147 31 0.82
04_04_1344 + 32787574-32787632,32788488-32789070,32789211-327894... 31 1.4
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 29 3.3
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 29 3.3
02_05_0943 + 32976990-32976996,32977119-32977464,32977586-329777... 29 5.8
12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302... 28 7.7
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 28 7.7
02_02_0156 - 7277793-7277875,7278535-7278638,7278808-7279211,727... 28 7.7
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 34.3 bits (75), Expect = 0.12
Identities = 30/91 (32%), Positives = 41/91 (45%)
Frame = +2
Query: 305 PLPHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFN 484
PLP P R TP H G R + TT PS T P+ +SP+C S +++ + +
Sbjct: 373 PLPAPCRRQTPHHHQVAALGARLRVEETTTTLPS--TPSPS-SSPQC--FSTQTRPLVAS 427
Query: 485 DTSQSPTRRRALXQVQPERGGSNIGSPCWRR 577
S TRR P S++ SP W R
Sbjct: 428 SNYGSSTRR--TRSTPPTSSASSMTSPRWCR 456
>03_05_0847 + 28186873-28188147
Length = 424
Score = 31.5 bits (68), Expect = 0.82
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 305 PLPHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSG 409
PLP S+R+ P L R R+ DG VD P G
Sbjct: 161 PLPSMSSRDAPCLQMRPRRQDGRLIVDAVVVRPRG 195
>04_04_1344 +
32787574-32787632,32788488-32789070,32789211-32789423,
32789884-32790173,32791201-32791312,32791394-32791630,
32791714-32792394
Length = 724
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 350 CREAVVYFGLKGGAAVVTILRPKNFYLKVCGAFTLWMSMGSSNHLTQG 207
C FG+ A V ILRP NF K+C F W + + + L QG
Sbjct: 342 CSTNSFQFGIFEQALVSGILRPGNFISKICYCF--WWGLQNLSTLGQG 387
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Frame = +2
Query: 308 LPHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFND 487
+P PS+ PLL G G +V G +T+ P +PR G+A L +
Sbjct: 369 VPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPPGAAMVPMMLPDG 428
Query: 488 ----TSQSPTRRRALXQVQPERGGSNIGS 562
Q P + L P++ G GS
Sbjct: 429 RLVYVVQQPGGQLPLASPPPQQAGHRSGS 457
>11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Frame = +2
Query: 308 LPHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFND 487
+P PS+ PLL G G +V G +T+ P +PR G+A L +
Sbjct: 777 VPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPPGAAMVPMMLPDG 836
Query: 488 ----TSQSPTRRRALXQVQPERGGSNIGS 562
Q P + L P++ G GS
Sbjct: 837 RLVYVVQQPGGQLPLASPPPQQAGHRSGS 865
>02_05_0943 +
32976990-32976996,32977119-32977464,32977586-32977796,
32977997-32978072,32978175-32978277,32978601-32978669,
32978785-32978821,32978904-32978978,32979052-32979103,
32979188-32979232,32979342-32979442
Length = 373
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 666 AVAAHPVRENRADRL--DGTEAGRRVRQTTRPRLQHGLPILEPPRSGCTCXRARRLV 502
A A P EN + ++ D GR +T P QH L E SGCTC R++
Sbjct: 108 AAATVPPFENISPKMLADSMTLGRDNGRTREPVDQHSL---EENHSGCTCVAVPRII 161
>12_01_0386 +
3023431-3023522,3023951-3024097,3024227-3024308,
3024801-3024842,3024930-3024989,3025430-3027109,
3027239-3027340,3027461-3027604,3027704-3027829,
3027933-3028100
Length = 880
Score = 28.3 bits (60), Expect = 7.7
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = -2
Query: 639 NRADRLDGTEAGRRVRQTTRPRLQHGLPILEPPRSGCTCXRARRLVGDCEVSLNNSDCDR 460
NR+ + A + Q + R HGLP + P C AR L S N
Sbjct: 161 NRSSMVASASAKNDLSQKVQSRSLHGLPSIHPYEQ-CYGHDARAL--SSSTSANTGRNTS 217
Query: 459 ALPASQRGDVLVGKDV--APD 403
L +QR D + + V APD
Sbjct: 218 LLKVAQRNDQAIREQVLYAPD 238
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 302 QPLPHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGATSLPT-RTSPRCDAGS 457
QP P P + P G N+Q G R DGT G T T+P +GS
Sbjct: 452 QPQPQPQPQPQPPA-GANKQPPGPRMPDGTRGFAMGRGKPQTSTTTPSASSGS 503
>02_02_0156 -
7277793-7277875,7278535-7278638,7278808-7279211,
7279403-7279543,7279700-7279904,7279984-7280093
Length = 348
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = +2
Query: 371 TRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQSPTRRRALXQVQPERGG 547
TR D +H S + + + A S + F+DTS + ++ V PE G
Sbjct: 182 TRQADSVLKHSSSSPGITSLGKGTSVGSGAASDLDNFSDTSDRQSEAGSMLSVDPEISG 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,241,084
Number of Sequences: 37544
Number of extensions: 472194
Number of successful extensions: 1567
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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