Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_F13
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.087
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.61 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.81 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.3 bits (70), Expect = 0.087
 Identities = 40/129 (31%), Positives = 46/129 (35%), Gaps = 11/129 (8%)
 Frame = +1

Query: 478  PLPTQSXXXGPPXHAXXPXSSFGXXXAPXPHEAGXPXFXPAASSAXXXXPRXXDARPRXX 657
            P+PT +    PP     P SS G   AP P         PA SS     P    A P   
Sbjct: 1044 PIPTST----PPV----PKSSSGAPSAPPP--------VPAPSSEIPSIPAPSGAPPVPA 1087

Query: 658  PXA-----GPXXXAXP-PRXXXEVPPXXPXPXGA-----PXXTAPPPXXPXGXXXLXXPF 804
            P        P   A P P+    VPP  P P GA     P   APP   P G   +  P 
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPV-PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPS 1146

Query: 805  XXSPXPRSP 831
              +P   +P
Sbjct: 1147 VAAPPVPAP 1155



 Score = 32.3 bits (70), Expect = 0.087
 Identities = 30/120 (25%), Positives = 36/120 (30%), Gaps = 2/120 (1%)
 Frame = +1

Query: 478  PLPTQSXXXGPPXHAXXPXSSFGXXXAPXPHEAGXPXFXPAASSAXXXXPRXXDARPRXX 657
            P P+ +    P      P         P P  +G P   P  S A    P      P   
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV-PKPSVAAPPVPAPSSGIPPVP 1182

Query: 658  PXAGPXXXAXPPRXXXEVP-PXXPXPXGAPXXTAPP-PXXPXGXXXLXXPFXXSPXPRSP 831
              A       PP     VP P    P   P  TAPP P    G   +  P   +P   +P
Sbjct: 1183 KPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 530  PXPVSGXTXPPPXTKRGPXXSPPXLXRPXSGPPXV 634
            P P+   T P P +  G   +PP +  P S  P +
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSI 1076



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 30/120 (25%), Positives = 34/120 (28%), Gaps = 1/120 (0%)
 Frame = +1

Query: 478  PLPTQSXXXGP-PXHAXXPXSSFGXXXAPXPHEAGXPXFXPAASSAXXXXPRXXDARPRX 654
            P P+      P P  A    +  G    P P  A  P   P  S A    P    A P  
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPV--PKPSVAVPPVPAPSGAPPVP 1124

Query: 655  XPXAGPXXXAXPPRXXXEVPPXXPXPXGAPXXTAPPPXXPXGXXXLXXPFXXSPXPRSPP 834
             P       A P       PP       AP   AP    P     +  P   +P    PP
Sbjct: 1125 KPSVA----APPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 25/102 (24%), Positives = 31/102 (30%)
 Frame = +1

Query: 529  PXSSFGXXXAPXPHEAGXPXFXPAASSAXXXXPRXXDARPRXXPXAGPXXXAXPPRXXXE 708
            P  S      P P  A  P     +++     P      P+    A P      P    E
Sbjct: 1015 PKLSSKAPPVPLP-SADAPPIPVPSTAPPVPIPTSTPPVPKSSSGA-PSAPPPVPAPSSE 1072

Query: 709  VPPXXPXPXGAPXXTAPPPXXPXGXXXLXXPFXXSPXPRSPP 834
            +P   P P GAP   AP    P     +  P    P    PP
Sbjct: 1073 IPSI-PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP 1113


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 237 VRVHRANTGRSSNELDRQTTXLERR 311
           +R H+ + GR+  ELDR+ T L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = +1

Query: 688 PPRXXXEVPPXXPXPXGAPXXTAPPPXXPXGXXXLXXPFXXSPXPRSPP 834
           PP      PP  P P G      PPP  P            +P P++ P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/48 (29%), Positives = 17/48 (35%)
 Frame = +2

Query: 485 LRSLXXXAPPXMXXXPXPVSGXTXPPPXTKRGPXXSPPXLXRPXSGPP 628
           L+S     P  +   P P      PP     GP   PP      +GPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/64 (26%), Positives = 20/64 (31%)
 Frame = +1

Query: 640  ARPRXXPXAGPXXXAXPPRXXXEVPPXXPXPXGAPXXTAPPPXXPXGXXXLXXPFXXSPX 819
            A P   P   P   A PP+     PP  P     P    P P  P        P   +P 
Sbjct: 1684 AHPVSTPPVRPQSAA-PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742

Query: 820  PRSP 831
              +P
Sbjct: 1743 VPNP 1746



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +2

Query: 530  PXPVSGXTXPPPXTKRGPXXS-PPXLXRPXSGPP 628
            P  +S  T PPP     P  S PP    P S PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/48 (29%), Positives = 16/48 (33%)
 Frame = +1

Query: 691  PRXXXEVPPXXPXPXGAPXXTAPPPXXPXGXXXLXXPFXXSPXPRSPP 834
            P      PP  P     P  +AP P  P     +  P    P P  PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPP--PMSVPPPPSAPPMPAGPP 1728


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 712 PPXXPXPXGAPXXTAPPPXXPXG 780
           PP  P P G    + PPP  P G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 20/72 (27%), Positives = 20/72 (27%)
 Frame = -2

Query: 773 GXXGGGAVXXGAPXGXGXXGGTSXXHRGGXAXXXGPAXGXXRGRASXXRGXXXKAXEAAG 594
           G  GG     G   G G  GG    H G      GP  G   G      G         G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP--GGFEGGPGGFGGGPGGFGGGLG 252

Query: 593 XNXGXPASXGXG 558
              G P   G G
Sbjct: 253 GFGGGPGGFGGG 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,136
Number of Sequences: 5004
Number of extensions: 38245
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)