Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_F09
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 32 0.61
03_04_0006 + 16257288-16259522 30 2.5
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.3
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 29 4.3
03_05_0183 - 21681673-21682524 29 4.3
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 4.3
06_03_1448 + 30235336-30236763 29 5.7
06_03_1443 + 30182018-30183445 29 5.7
06_03_1440 + 30166515-30167942 29 5.7
06_03_1437 + 30151030-30152457 29 5.7
06_03_1429 + 30100834-30102261 29 5.7
06_03_1425 + 30084383-30085810 29 5.7
06_03_1420 - 30053713-30055140 29 5.7
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 5.7
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 5.7
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 7.5
02_03_0367 + 18220099-18220905 28 7.5
02_01_0683 - 5067432-5067944 28 7.5
12_02_0077 - 13288916-13289659,13289689-13289691 28 9.9
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692 28 9.9
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 9.9
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 9.9
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.61
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -3
Query: 380 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 258
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 191 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 39
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 191 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 66
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +1
Query: 280 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 459
R + +R E G +RR L D +RG+ + A H AG + RG KP
Sbjct: 59 RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113
Query: 460 RVEQKGK 480
RV+ G+
Sbjct: 114 RVDNGGR 120
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 608 SQAFIATLLFDPSMSALPIIAKQNSPS 688
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 547 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 654
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 385 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 248
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 385 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 248
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 385 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 248
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 385 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 248
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 385 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 248
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 385 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 248
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 385 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 248
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 313 TTLHAWNETPCARRYY 266
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 321 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 410
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 400 PPQSNSPPGSVLEPDHAGVLNGDE 329
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>02_03_0367 + 18220099-18220905
Length = 268
Score = 28.3 bits (60), Expect = 7.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 661 YHCEAKFAKRWDCSPSK 711
+ C F RWDCSPS+
Sbjct: 99 FDCYTSFWSRWDCSPSR 115
>02_01_0683 - 5067432-5067944
Length = 170
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 703 GNNPNAWRILLRNDRKSRHRRIKKQRRYERLAA 605
GN+ R L+ N +R R++KQRR + L++
Sbjct: 70 GNDERKKRRLVSNRESARRSRVRKQRRLDELSS 102
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 134 ESSSTGSSFPADSPKPVPLAVVSLDSR 54
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
Length = 455
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 244 GRKRCAVD-NIGGRTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNN 420
GR+ C+VD +GG F GG A+ R+ + +P +G A + TGA + ++
Sbjct: 48 GRQECSVDLKLGGLGEFG--------GGGAQPRVAVAGEPAKGKGPAAAATGAA-AAASS 98
Query: 421 AGVLRP 438
A RP
Sbjct: 99 APAKRP 104
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 277 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 399
G+T+ R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -3
Query: 164 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 57
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,047,902
Number of Sequences: 37544
Number of extensions: 497337
Number of successful extensions: 1677
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1675
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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