Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_F08
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 31 1.1
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 30 1.9
08_02_0049 + 11632868-11632948,11633230-11633322,11634937-116350... 28 7.8
04_01_0530 - 6928528-6929500,6929514-6930964 28 7.8
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 28 7.8
03_02_0412 - 8219712-8219837,8221451-8221543,8221826-8221906 28 7.8
02_01_0054 - 404464-405152,406087-406618 28 7.8
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -2
Query: 467 KRXIPGDGAXIRYTGAESVVPXGGCSRV*QYHVRPPQAFRGHQPSAAAPLXLRSNSVVCR 288
+R +P + T + S GGCS + PP AFRG+ + P+ + V CR
Sbjct: 46 RRRLPDWPSPNPVTASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCR 104
Query: 287 SNS 279
+ S
Sbjct: 105 TPS 107
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/80 (28%), Positives = 30/80 (37%)
Frame = +1
Query: 103 CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 282
CG V H L V LP R + A C + +R HR ++ RS
Sbjct: 20 CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79
Query: 283 LDRQTTELERRXSGAAALGW 342
R++ L RR LGW
Sbjct: 80 CRRRSPRLWRRSGSGFLLGW 99
>08_02_0049 +
11632868-11632948,11633230-11633322,11634937-11635030,
11635063-11635292
Length = 165
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 336 WLVSSERLWRPDVVLLNAAA--XTXGDYALRARVSNXGXVSWNXXLGHYHSQXL 491
W+ + +RLW P L+ A A + G A + N G + L Y S+ L
Sbjct: 16 WVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGAKEFRGTLTEYLSEKL 69
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 76 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 216
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 28.3 bits (60), Expect = 7.8
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 1/118 (0%)
Frame = -1
Query: 432 IHGRGERSPRRWXQPRLAVPRQASTSVPRTPAKCCSPTXPAFQLSRLSIQFI*RSACIRT 253
IHG+G RRW P + + + +T A + A +S + F R +
Sbjct: 410 IHGKGADMSRRWGNP-MEMSADVDDAKTKTTATAAAAELTAMAISPIP-GFTGRGGAEAS 467
Query: 252 VDSDSRMLACLKCRVRLTTIL-ESGGESRSYVARSESIMRDSDVAFSHSAALAIAQVR 82
+ L IL SG S S+ + R + +A + AAL + VR
Sbjct: 468 LRRSLAAACASMDSSSLARILCSSGSSSSSHATLAARHFRPALLAAAEPAALVVRAVR 525
>03_02_0412 - 8219712-8219837,8221451-8221543,8221826-8221906
Length = 99
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 336 WLVSSERLWRPDVVLLNAAA--XTXGDYALRARVSNXGXVSWNXXLGHYHSQXL 491
W+ + +RLW P L+ A A + G A + N G + L Y S+ L
Sbjct: 16 WVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGAKEFRGTLTEYLSEKL 69
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 28.3 bits (60), Expect = 7.8
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -3
Query: 349 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 191
E S + P V + +VDP L K +YS G L L ++ S G D
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319
Query: 190 GVGGGVPIVRCEERVDHEG 134
G GGG R RV EG
Sbjct: 320 GAGGGNLTARLLPRVRTEG 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,312,881
Number of Sequences: 37544
Number of extensions: 375238
Number of successful extensions: 1009
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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