Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_F08
(822 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ... 37 0.015
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 36 0.026
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 36 0.026
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 36 0.026
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 36 0.026
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 36 0.026
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 36 0.026
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 36 0.026
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 36 0.026
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 36 0.026
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 35 0.061
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 34 0.14
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 33 0.19
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 33 0.19
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 33 0.19
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 32 0.43
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 32 0.57
Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.75
Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical pr... 31 1.00
AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated... 31 1.00
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 31 1.3
Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 30 1.7
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 30 2.3
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 30 2.3
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 30 2.3
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 30 2.3
Z70205-8|CAO78730.1| 270|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 29 3.0
AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein. 29 3.0
Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical pr... 29 4.0
U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical p... 29 4.0
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 29 4.0
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 29 5.3
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 29 5.3
U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine r... 29 5.3
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 29 5.3
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 29 5.3
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 29 5.3
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 29 5.3
Z83104-2|CAB54203.1| 563|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z83104-1|CAB54204.1| 573|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical pr... 28 9.3
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 28 9.3
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 28 9.3
>AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ion
channel protein 6 protein.
Length = 462
Score = 37.1 bits (82), Expect = 0.015
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Frame = +2
Query: 35 VVIKCRRLILFWLPFLLTCAIASAAECENATSLSLMIDSLLATYDRD-SPPDSKIVVNLT 211
++I C L++ W+ LT + A E + + +L+ TYD D P D +V +T
Sbjct: 1 MLISCLLLLMLWILRFLT----AVAFLETSNTETLLQQLFNQTYDVDMKPSDDLTMVTIT 56
Query: 212 LH-LRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVGLQH 334
+ ++ +++ T++ + + W D L WN V ++
Sbjct: 57 PNTFILLSMDQTQETIQYSEEFLLRWYDPILHWNQSAVSYEN 98
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 36.3 bits (80), Expect = 0.026
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 316
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 317 XVG 325
G
Sbjct: 130 LFG 132
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 36.3 bits (80), Expect = 0.026
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 316
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 317 XVG 325
G
Sbjct: 130 LFG 132
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 36.3 bits (80), Expect = 0.026
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Frame = +2
Query: 65 FWLPFLLTCAIASAAEC-ENATSLSLMIDSLLATYDR----DSPPDSKIVVNLTLHLRHA 229
FWL LL S + E + D L+ Y+R + P+ + + L L L
Sbjct: 4 FWLFLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQI 63
Query: 230 -NIRESESTVRIQADLQMNWIDKRLSWN 310
++ E + + L+ WID++LSW+
Sbjct: 64 IDVHEIDQIMTCSVWLKQTWIDRKLSWD 91
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 36.3 bits (80), Expect = 0.026
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Frame = +2
Query: 65 FWLPFLLTCAIASAAEC-ENATSLSLMIDSLLATYDR----DSPPDSKIVVNLTLHLRHA 229
FWL LL S + E + D L+ Y+R + P+ + + L L L
Sbjct: 4 FWLFLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQI 63
Query: 230 -NIRESESTVRIQADLQMNWIDKRLSWN 310
++ E + + L+ WID++LSW+
Sbjct: 64 IDVHEIDQIMTCSVWLKQTWIDRKLSWD 91
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 36.3 bits (80), Expect = 0.026
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Frame = +2
Query: 65 FWLPFLLTCAIASAAEC-ENATSLSLMIDSLLATYDR----DSPPDSKIVVNLTLHLRHA 229
FWL LL S + E + D L+ Y+R + P+ + + L L L
Sbjct: 4 FWLFLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQI 63
Query: 230 -NIRESESTVRIQADLQMNWIDKRLSWN 310
++ E + + L+ WID++LSW+
Sbjct: 64 IDVHEIDQIMTCSVWLKQTWIDRKLSWD 91
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 36.3 bits (80), Expect = 0.026
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 316
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 317 XVG 325
G
Sbjct: 130 LFG 132
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 36.3 bits (80), Expect = 0.026
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 316
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 317 XVG 325
G
Sbjct: 130 LFG 132
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 36.3 bits (80), Expect = 0.026
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 316
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 317 XVG 325
G
Sbjct: 130 LFG 132
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 36.3 bits (80), Expect = 0.026
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 316
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 317 XVG 325
G
Sbjct: 130 LFG 132
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 35.1 bits (77), Expect = 0.061
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 164 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNA 313
YD D+P + L +L+ + E E V + +L W D RLSWNA
Sbjct: 65 YDPDAPQRYNYTLFL-YNLKLIQVNEPEEQVSVVLELMEYWYDPRLSWNA 113
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 164 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNA 313
YD ++P + L +L+ ++E + + + ++ W D RLSWNA
Sbjct: 64 YDNEAPKRYNYTIFL-YYLKLVEVQEPQEKISVVMEIMEYWYDARLSWNA 112
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 33.5 bits (73), Expect = 0.19
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 197 VVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 310
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 33.5 bits (73), Expect = 0.19
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 197 VVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 310
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP--DSK--IVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 304
+I+ L++ Y R+ P DS +VV+L + L+ N+ E E + + A L+ W D+ L
Sbjct: 25 LINDLMSGYVREERPTLDSSKPVVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLR 84
Query: 305 W 307
W
Sbjct: 85 W 85
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 206 LTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNA 313
L +L+ ++E E V + +L W D RLSWN+
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 31.9 bits (69), Expect = 0.57
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNA---GXVGLQHLAG 343
++ E + + ++ L +W+D RLSWN G + L H G
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNITLMHFPG 84
>Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical
protein T05C12.2 protein.
Length = 500
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 345 SSERLWRPDVVLLNAAAXT-XGDYALRARVSNXGXVSWN 458
+S +LWRPDV+L N+ + + Y+ R VS+ G V N
Sbjct: 103 ASFKLWRPDVLLFNSVSESFDSTYSSRFIVSSNGDVQQN 141
>Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical
protein T01H10.2 protein.
Length = 400
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 164 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNA 313
YD D+P + L L+ + E V + ++ W D RLSWNA
Sbjct: 64 YDPDAPKRYNYSIML-YSLKLVEVNEPAEKVAVVMEIMEYWYDIRLSWNA 112
>AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated
ion channel protein 10 protein.
Length = 493
Score = 31.1 bits (67), Expect = 1.00
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Frame = +2
Query: 104 AAECENATSL----SLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHA-NIRESESTVRI 262
A CEN +L S +++ + YDR P ++VN+T+ L ++E++
Sbjct: 57 ALNCENFRTLDNETSAILNDIFVGYDRRVLPFVQGPVLVNMTIVLGILIELKENQQLAAY 116
Query: 263 QADLQMNWIDKRLSWN 310
W D RLSW+
Sbjct: 117 VISHTQRWYDGRLSWD 132
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 179 PPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXV-GLQHL 337
PP +I + L++ ++ + E E D + +W D RLSW+ G+ H+
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYGGINHI 131
>Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical
protein Y57G11C.2 protein.
Length = 439
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = +2
Query: 65 FWLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA- 229
F F L + + E + T + D L+ YD P + +++N++++
Sbjct: 6 FKFVFYLAISWCNLLEVDGITVAEQLKDVLMEGYDSSIRPVNNERDILIINISMNTMSVL 65
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWN 310
+ +E T+ ++ + W D+ L WN
Sbjct: 66 TLDPAEETINFSSEFILQWKDEFLFWN 92
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 116 ENATSLS-LMIDSLLATYDRDSPPDSKIVVNLT-LHLRHANIRESESTVRIQADLQMNWI 289
E+A L+ L I +A+ + + +N L+H + E + I L+++W
Sbjct: 33 ESAKKLAKLNIPHAIASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWH 92
Query: 290 DKRLSWN 310
D RL WN
Sbjct: 93 DDRLMWN 99
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +2
Query: 77 FLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHL-RHANIRE 241
FLL I +S ++++LL Y++ P + V +L R ++ E
Sbjct: 11 FLLVIFILHIVTINANKHVSQLLENLLTDYNKAVRPVHNASDALKVKFGANLCRLIDVDE 70
Query: 242 SESTVRIQADLQMNWIDKRLSWN 310
+ L+M W DK+L+WN
Sbjct: 71 VNQVLTTSLWLEMQWYDKKLTWN 93
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 318 EWGCSTWL-VSSERLWRPDVVLL-NAAAXTXGDYALRARVSNXGXVSW 455
+WG ++ + S+++W PD+VL NA A++ + G V W
Sbjct: 96 DWGGVEYIHIPSDQIWIPDIVLYNNADGEPHITITSLAKIDHHGRVVW 143
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +2
Query: 80 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRES 244
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 245 ESTVRIQADLQMNWIDKRLSWNAGXVG 325
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +2
Query: 80 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRES 244
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 245 ESTVRIQADLQMNWIDKRLSWNAGXVG 325
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +2
Query: 80 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRES 244
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 245 ESTVRIQADLQMNWIDKRLSWNAGXVG 325
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +2
Query: 80 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRES 244
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 245 ESTVRIQADLQMNWIDKRLSWNAGXVG 325
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>Z70205-8|CAO78730.1| 270|Caenorhabditis elegans Hypothetical
protein C11H1.4b protein.
Length = 270
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = -3
Query: 349 EDTSQVLQPHSPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVP 170
E+ V + C P F D + H G+T+ ++Q+ ++D G GV
Sbjct: 82 ENVRLVFEKARSCAPCILFFDELDSLAPKRGHDSTGVTDRVVNQLLTELDGAEGGMKGVI 141
Query: 169 IVRCEERVD 143
I+ C R+D
Sbjct: 142 ILGCTSRID 150
>Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical protein
C11H1.4a protein.
Length = 996
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = -3
Query: 349 EDTSQVLQPHSPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVP 170
E+ V + C P F D + H G+T+ ++Q+ ++D G GV
Sbjct: 808 ENVRLVFEKARSCAPCILFFDELDSLAPKRGHDSTGVTDRVVNQLLTELDGAEGGMKGVI 867
Query: 169 IVRCEERVD 143
I+ C R+D
Sbjct: 868 ILGCTSRID 876
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 206 LTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 310
L +L+ ++E V + +L W D RLSWN
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWN 113
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/79 (20%), Positives = 32/79 (40%)
Frame = +2
Query: 101 SAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQM 280
S C+ + + TY + +K+V ++ + + I E V++ +
Sbjct: 54 SCHSCQGGDRAWKLRTHIQTTYQNATDNKTKVVRVESVRINNVEIDERRQNVKVFGRFVL 113
Query: 281 NWIDKRLSWNAGXVGLQHL 337
+W D +SW+ GL L
Sbjct: 114 SWNDTMVSWDKEQWGLSWL 132
>AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein.
Length = 996
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = -3
Query: 349 EDTSQVLQPHSPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVP 170
E+ V + C P F D + H G+T+ ++Q+ ++D G GV
Sbjct: 808 ENVRLVFEKARSCAPCILFFDELDSLAPKRGHDSTGVTDRVVNQLLTELDGAEGGMKGVI 867
Query: 169 IVRCEERVD 143
I+ C R+D
Sbjct: 868 ILGCTSRID 876
>Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical
protein R03E1.3 protein.
Length = 502
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 200 VNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLSWNA 313
VN+ L + H + E E T + + WID+ + W+A
Sbjct: 54 VNVFLSIAHVEKVDEHEQTALVHGHIWATWIDEYMQWDA 92
>U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical
protein T20B12.9 protein.
Length = 476
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 110 ECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHANIRE-SESTVRIQADLQMN- 283
E + +L +ID+LL YD P+++ VN+T+ L + SE T D+ +
Sbjct: 9 EFNSRINLGKLIDTLLTDYDTHLLPEAE-GVNVTIELHVQGVSGISEITGDFSLDVMYSE 67
Query: 284 -WIDKRLSW 307
W D RLS+
Sbjct: 68 IWQDPRLSF 76
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 179 PPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 310
PP +++ + + + L+ ++ E E V D W D+RL WN
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWN 93
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAAAXTXG-DYALRARVSNXGXVSW 455
V S+R+W PD+VL N A + V + G V+W
Sbjct: 137 VPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTW 175
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 345 SSERLWRPDVVLLNAAA 395
SS+ +W+PDV+L N+AA
Sbjct: 105 SSDHIWKPDVLLYNSAA 121
>U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine
receptor protein 10 protein.
Length = 510
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 354 RLWRPDVVLLNAAAXT-XGDYALRARVSNXGXVSW 455
++WRPD++L N+A+ + V N G V+W
Sbjct: 48 QIWRPDILLYNSASEDFDSSFKSNEVVYNTGEVNW 82
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAAAXTXG-DYALRARVSNXGXVSW 455
V S+R+W PD+VL N A + V + G V+W
Sbjct: 137 VPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTW 175
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAAXTXGDYAL----RARVSNXGXVSW 455
G V S+ +W PDVVL N A G+Y + +A+++ G V W
Sbjct: 97 GVEVLYVPSDTIWLPDVVLYNNA---DGNYQVTIMTKAKLTYNGTVEW 141
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 212 LHLRHAN-IRESESTVRIQADLQMNWIDKRLSWN 310
LH+ H + I++ + +++ W+D+RL WN
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWN 95
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAAXTXGDYAL----RARVSNXGXVSW 455
G V S+ +W PDVVL N A G+Y + +A+++ G V W
Sbjct: 97 GVEVLYVPSDTIWLPDVVLYNNA---DGNYQVTIMTKAKLTYNGTVEW 141
>Z83104-2|CAB54203.1| 563|Caenorhabditis elegans Hypothetical
protein F09B12.1b protein.
Length = 563
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 124 NITVPHDRLAPRNVRSGLPPRLQNRSQPDP 213
N+ P D+L + SG+P +LQNR P P
Sbjct: 114 NVPPPDDQL-DWQIASGVPVQLQNRGVPQP 142
>Z83104-1|CAB54204.1| 573|Caenorhabditis elegans Hypothetical
protein F09B12.1a protein.
Length = 573
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 124 NITVPHDRLAPRNVRSGLPPRLQNRSQPDP 213
N+ P D+L + SG+P +LQNR P P
Sbjct: 124 NVPPPDDQL-DWQIASGVPVQLQNRGVPQP 152
>Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.3 protein.
Length = 399
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 164 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 310
+D D+P + L L+ + E + V + ++ W D RL+WN
Sbjct: 65 HDPDAPGRWNYTL-LLFSLKLVEVTEPQEKVSVVMEVMEYWFDARLTWN 112
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 239 ESESTVRIQADLQMNWIDKRLSWN 310
E + ++ L +NW+D RLSWN
Sbjct: 154 ERNQALTTRSWLNINWMDPRLSWN 177
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 704 GPRXPGMFXPXXGPPXSRALGGXGGLXXXPGXXG 805
GP P + P GPP + + G G PG G
Sbjct: 267 GPPGPPGYTPPPGPPGTPGVQGEAGQDGEPGVPG 300
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,757,059
Number of Sequences: 27780
Number of extensions: 281446
Number of successful extensions: 1460
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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