Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_F05
(869 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 42 9e-05
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 31 0.21
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 30 0.49
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 28 1.5
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 4.6
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 27 4.6
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 6.1
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 26 6.1
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 8.0
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 26 8.0
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 8.0
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 42.3 bits (95), Expect = 9e-05
Identities = 27/87 (31%), Positives = 46/87 (52%)
Frame = +2
Query: 431 NIICFQELWNMPFAFCTREKQPWCEFAESAEDGXTTTFLRELAIKYAMVIVSSILERDEK 610
N+I F EL + C + + AE A +G + + LA KY + I+ E++EK
Sbjct: 39 NLILFPELITSGYE-CGNT---FTQIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEK 94
Query: 611 HSDILWNPAGVISDXENVIGKHRKNHI 691
S+I++N I++ N+ G +RK H+
Sbjct: 95 QSNIIYNSCIYITENGNLGGVYRKVHL 121
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 515 SAEDGXTTTFLRELAIKYAMVIVSSILERDEKHSDILWNPAGVIS 649
SAE+ + + + +++VS++LE DEKH D++ G+ S
Sbjct: 979 SAENTTSFSIFAAQGLTDFLIVVSNLLEMDEKHVDVVLGKLGLSS 1023
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 29.9 bits (64), Expect = 0.49
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -3
Query: 516 DSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCSLTGR 352
++A SH CF QN+ + + + +P T F+ LLK AFF L GR
Sbjct: 241 NNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDHLFGR 293
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -2
Query: 325 NYSYLHNSRRSGLLVLGRESVC---GDVEVSLLSCSDRGF 215
++S N++R+G L +G ++VC GD + LSC G+
Sbjct: 885 DFSRSVNNQRNGHLTVGSDAVCLSLGDSQFHRLSCDSVGY 924
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 4.6
Identities = 29/116 (25%), Positives = 48/116 (41%)
Frame = -2
Query: 496 RLLLPCAEREGHIPQLLEADDVNTLLAGNIDDLLDFIENCFLLLVDWTIGGHRDGMLNYS 317
R LL C +R P +L DV ++DD + F+ T GH++ + N S
Sbjct: 119 RALLSCCKRSKD-PSILFPTDVPC----SLDDDVSFL----------TFKGHKNHLENRS 163
Query: 316 YLHNSRRSGLLVLGRESVCGDVEVSLLSCSDRGFFQFDFKVIPPPKMNSVELFQVA 149
+ H+S V+ E + L DR K++ P N ++L +V+
Sbjct: 164 FFHDSESDNFKVVLSNCAINSKEDNNLVTEDR--VNLGAKLLLVPVQNLIKLLKVS 217
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 542 FLRELAIKYAMVIVSSILERDEKHSDILWNP---AGVISD 652
+LR+L A + I+ RD K + WNP GVI D
Sbjct: 162 YLRDLLKGLAHIDAKGIIHRDIKPGNFAWNPYTQRGVILD 201
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 660 FSXSLMTPAGFQSMSECFSSLSNIEDTITIAY 565
+S S+M S SEC +LSNI I+ Y
Sbjct: 226 YSYSVMIAQAILSSSECMMTLSNIYSWISTHY 257
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 6.1
Identities = 31/130 (23%), Positives = 55/130 (42%)
Frame = +2
Query: 302 RIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCT 481
R ++G++Q +A D+ N Q + K+++ A + G N+I E++N P+ T
Sbjct: 42 RAFRIGLVQ--LANTKDKSENLQLARL-----KVLEAA-KNGSNVIVLPEIFNSPYG--T 91
Query: 482 REKQPWCEFAESAEDGXTTTFLRELAIKYAMVIVSSILERDEKHSDILWNPAGVISDXEN 661
+ E E E + L +A + + E+ L+N A V
Sbjct: 92 GYFNQYAEPIE--ESSPSYQALSSMAKDTKTYLFGGSI--PERKDGKLYNTAMVFDPSGK 147
Query: 662 VIGKHRKNHI 691
+I HRK H+
Sbjct: 148 LIAVHRKIHL 157
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 134 NNLTGRDLEEFNRIHFGRRNNLEI 205
NN+ R +EE N I G+R LE+
Sbjct: 8 NNILKRHIEEDNNIDNGKRKKLEL 31
>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 8.0
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 455 WNMPFAFCTREKQPWCEFA-ESAEDGXTTTFLRELAIKYAMVIVSSILERDEKHSDILWN 631
+N F +EK+ E E A G T F+R ++YA I IL+ +K +
Sbjct: 396 YNEQFKDLMKEKRDGYEILFEDAIRGDPTKFIRYDEVEYAWKIWDEILDSPKKP---IPY 452
Query: 632 PAGVISDXENVIGKHRKNHI 691
PAG SD + + K H+
Sbjct: 453 PAG--SDGPEGLEAYMKRHL 470
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 104 ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 214
E H +E +I + N+T DL F + FG+ N ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,132
Number of Sequences: 5004
Number of extensions: 59740
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -