Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_F05
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 190 2e-48
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 40 0.003
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 38 0.008
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 36 0.042
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 29 4.8
01_06_1805 - 39999987-40000169,40000648-40000974,40001724-400020... 28 8.5
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 190 bits (462), Expect = 2e-48
Identities = 103/209 (49%), Positives = 131/209 (62%), Gaps = 8/209 (3%)
Frame = +2
Query: 113 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 283
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 284 EQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 448
E R PR+++VG+IQ+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 449 ELWNMPFAFCTREKQPWCEFAESAEDGXTTTFLRELAIKYAMVIVSSILERDEKHSDILW 628
E W MPFAFCTREK+ WCEFAE DG +T FL++LA KY MVIVS ILERD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 629 NPAGVISDXENVIGKHRKNHIPXIGEFNE 715
N A VI + N+IG HRKNHIP +G+FNE
Sbjct: 206 NTAVVIGNHGNIIGIHRKNHIPRVGDFNE 234
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/100 (26%), Positives = 52/100 (52%)
Frame = +2
Query: 395 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGXTTTFLRELAIKYAM 574
+++I A ++G NI+ QEL+ + FC ++ + + A+ + T ++LA + +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 575 VIVSSILERDEKHSDILWNPAGVISDXENVIGKHRKNHIP 694
VI S E + ++ +N +I +G +RK+HIP
Sbjct: 91 VIPVSFFE---EANNAHYNSVAIIDADGTDLGLYRKSHIP 127
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 38.3 bits (85), Expect = 0.008
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Frame = +2
Query: 359 VNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGXTT 538
V K + ++ I+ A G ++ E+WN P++ + E+AE E G
Sbjct: 55 VTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYS-----NDSFPEYAEDIEAGGDA 109
Query: 539 ----TFLRELAIKYAMVIVSSILERDEKHSDILWNPAGVISDXENVIGKHRKNHI 691
+ + E+A + +V + E+ + L+N V + GKHRK H+
Sbjct: 110 APSFSMMSEVARSLQITLVGGSIS--ERSGNKLYNTCCVFGSDGELKGKHRKIHL 162
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 35.9 bits (79), Expect = 0.042
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +2
Query: 437 ICFQELWNMPFAFCTREKQPWCEFAESAEDG--XTTTFLRELAIKYAMVIVSSILERDEK 610
+ FQE+WN P++ E P E + G + + L E+A + + IV + E+
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSI--PER 68
Query: 611 HSDILWNPAGVISDXENVIGKHRKNHI 691
S L+N VI + KHRK H+
Sbjct: 69 SSGRLFNTCCVIGPDGQIKAKHRKLHL 95
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 501 HHGCFSLVQNAKGIFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 370
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
>01_06_1805 -
39999987-40000169,40000648-40000974,40001724-40002017,
40002112-40002231,40002714-40002776,40003150-40003310,
40003864-40004035
Length = 439
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 113 CEFHSP*LRVMPNVACVKSTADFSSRP 33
C+FH P +R MP CV S RP
Sbjct: 353 CKFHHPRVRSMPTPDCVLSPVGLPLRP 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,103,356
Number of Sequences: 37544
Number of extensions: 415684
Number of successful extensions: 1080
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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