Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_F03
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0142 - 940421-940701,941262-941574                               33   0.31 
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999...    28   6.6  
01_06_1377 + 36764461-36765339                                         28   6.6  

>05_01_0142 - 940421-940701,941262-941574
          Length = 197

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 518 GGGXPPXXXXPPQXVXPPXXXXXPPXXXFXPP 613
           G G PP    PPQ   PP     PP   + PP
Sbjct: 26  GHGYPPHQGYPPQGYPPPPGAYPPPPGAYPPP 57


>03_03_0118 +
           14597863-14597929,14598844-14599806,14599909-14599936,
           14600288-14600666
          Length = 478

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +2

Query: 521 GGXPPXXXXPPQXVXPPXXXXXPPXXXFXPP 613
           G  PP    PP    PP     PP   F PP
Sbjct: 377 GLTPPVGTSPPTDFSPPAAGTTPPAGGFTPP 407


>01_06_1377 + 36764461-36765339
          Length = 292

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +3

Query: 534 PXKXXPPXXSXPXXXXXPPPXXFXXPPXP 620
           P    PP  S P     PPP  +  PP P
Sbjct: 158 PEPQYPPPSSSPYYFPPPPPPAYSAPPPP 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,914,763
Number of Sequences: 37544
Number of extensions: 225670
Number of successful extensions: 608
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)