Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_F02
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.4
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.4
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.2
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.2
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 3.2
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 27 3.2
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 4.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 4.2
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 26 5.5
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.3
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 7.3
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.0
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 276 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 446
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 447 DVTVEGVNVLATPSSS 494
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.4
Identities = 25/111 (22%), Positives = 40/111 (36%)
Frame = +3
Query: 276 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 455
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 456 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTXPPQT 608
V +TP ++ ++ + +T Y I S P T P T
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNY---TISSSTPVTSTPVT 587
Score = 27.5 bits (58), Expect = 2.4
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 2/109 (1%)
Frame = +3
Query: 288 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 461
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 462 GVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTXPPQT 608
V +TP ++ ++ + +T Y I S P T P T
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNY---TISSSTPVTSTPVT 528
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 523 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 404
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 258 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 371
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 3.2
Identities = 34/121 (28%), Positives = 47/121 (38%)
Frame = +3
Query: 276 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 455
T E K N PN D V L + PS PS +PV++ + T
Sbjct: 194 TPKENKKNVNKETYQPNTFRRSPLKNDTGSVELSNLYMPSPPSSALPVSLVSAPSPPRAT 253
Query: 456 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTXPPQT*HPFPSIPL 635
V L SS G L+++A + +P + SP T P T FPS+PL
Sbjct: 254 NVAVPCLKHLESSE--QGNNLLINKA-------FTSPRLPSPPQSTRPSST--RFPSVPL 302
Query: 636 N 638
+
Sbjct: 303 S 303
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = +3
Query: 480 TPSSSRITIGGLALMHQATLPCDL-----GYINPIIKSPIPYTXPPQT*HPFPSIPLNA 641
TPS+S TI + LP + G I+ I +P P PP P PSI ++A
Sbjct: 195 TPSAS--TINDQPFSNSFDLPSQVIADGTGAISDINGNPFPMNSPPLDMEPLPSISMDA 251
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 45 SAASATPSLVNAFSSSKPPQTDNP 116
S S+TPSL ++ +S PP T P
Sbjct: 158 STVSSTPSLNHSLQNSMPPSTPTP 181
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 339 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 428
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 30 VPLXVSAASATPSLVNA-FSSSKPPQTDNPSARS 128
+P A AT S NA FSSS PPQ N S S
Sbjct: 1599 LPETPKPAIATHSRYNASFSSSPPPQPGNSSGMS 1632
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 30 VPLXVSAASATPSLVNA-FSSSKPPQTDNPSARS 128
+P A AT S NA FSSS PPQ N S S
Sbjct: 1599 LPETPKPAIATHSRYNASFSSSPPPQPGNSSGMS 1632
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 3 WDDLFMEEIVPLXVSAASATPSLVNAFSSSKPPQTD 110
W D+F + +P+ ++A PSL A SK P T+
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 508 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 374
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 99 GVWKKRKH*PRREWPKRQKRXKAQF 25
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,841
Number of Sequences: 5004
Number of extensions: 58284
Number of successful extensions: 209
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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