Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_F02
(809 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 34 0.15
07_01_0373 + 2783596-2784933 31 0.82
06_03_1310 + 29238644-29240260 31 1.1
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.3
07_01_0626 - 4681826-4682707 29 4.4
04_01_0041 - 464695-464850,467485-469029 29 5.8
01_05_0227 - 19512866-19514983 29 5.8
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 7.6
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 28 7.6
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +1
Query: 532 PPSPAISATSTRSSNPRFHTPXHPRLNIHFHQSP*TPVLKRSSRPGFKASXCHQKAPSXY 711
PP+P A+S P HTP P+ +SP TP + SS P A H +P
Sbjct: 651 PPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSPPP-PAPEGHMPSPPKS 709
Query: 712 XTP 720
P
Sbjct: 710 TPP 712
Score = 33.5 bits (73), Expect = 0.20
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +1
Query: 532 PPSPAISATSTRSSNPRFHTPXHPRLNIHFHQSP*TPVLKRSSRP 666
PP+P A+S P HTP P +SP TP K SS P
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSPP 662
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 532 PPSPAISATSTRSSNPRFHTPXHPRLNIHFHQSP*TPVLKRSSRP 666
PP+P ++S P H P P+ +SP TP + SS P
Sbjct: 684 PPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSPPTPESEASSPP 728
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 532 PPSPAISATSTRSSNPRFHTPXHPRLNIHFHQSP*TPVLKRSSRP 666
PP+P A+S P HTP P+ + +SP P +S P
Sbjct: 717 PPTPESEASSPPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPP 761
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +1
Query: 532 PPSPAISATSTRSSNPRFHTPXHPRLNIHFHQSP*TPVLKRSSRPGFKASXCHQKAPSXY 711
PP+P A+ + P +TP P+ +SP TP K SS P A H +P
Sbjct: 587 PPTPESKASPPPT--PEEYTPSPPKSTPPAEKSPPTPESKASSPPP-PAPEGHTPSPPES 643
Query: 712 XTPS 723
PS
Sbjct: 644 TPPS 647
>07_01_0373 + 2783596-2784933
Length = 445
Score = 31.5 bits (68), Expect = 0.82
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -2
Query: 91 EEEKALTKEGVAEAAETXKGTISSMNRS 8
E+++ LTK G + +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178
>06_03_1310 + 29238644-29240260
Length = 538
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Frame = +3
Query: 552 GYINPIIKSPIPYTXPPQT*HPFPSIPLNARTKKEFAP--GV*SLRLSSKGSIXVXXPLG 725
GY+ P + P P T PP P P P + + P G L + P
Sbjct: 451 GYVLPPLTPPPPTTTPPGHHAPVPGTPSSPPSSSWSPPQGGGGKLPFPPVHGVAYSSPPP 510
Query: 726 PWGMAKXGFXPPYXQSXXXNPXPSXP 803
P K F P Y + P PS P
Sbjct: 511 PPSGDKLPFPPVYGVAYSSPPPPSKP 536
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 282 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 455
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 456 VEGVNVLATPSSSRITIGGLALMHQ 530
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>07_01_0626 - 4681826-4682707
Length = 293
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 527 SSHPPLRSRLHQPDHQIPDSIHQXTPDLTSISINPPERPY*KGVRARG 670
++ P + S L P+H P +++ TP T+ +I P P K +A G
Sbjct: 47 TTRPAVESSLAAPEHVFPATMNSSTPSTTAAAIATPS-PSIKTNKAEG 93
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 243 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 419
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 420 TVD 428
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 460 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 368
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +3
Query: 234 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 413
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 414 PVTVDLCWTTADVTVEGVNVLATPSS 491
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 544 AISATSTRSSNPRFHTPXHPRLNIHFHQSP*TPV 645
A S+T+TR S PR H P P ++ +S +P+
Sbjct: 2 AASSTATRLSPPRLHAPTTPSPHLPLRRSRFSPL 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,232,238
Number of Sequences: 37544
Number of extensions: 464265
Number of successful extensions: 1300
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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