Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_F01
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    29   1.0  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   7.1  
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom...    26   7.1  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    25   9.4  

>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +3

Query: 306 IESREPAPPRDLSQLESRKALSSHPSYLAYSSTIFPGRRRPS*LYSPTTRLFT 464
           + +  PAPP   +        SS PS    +S  FP     S L+SPT R  T
Sbjct: 233 LSTSTPAPPNS-NNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPLT 284


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = +2

Query: 350 GVPQGSVLTPLLFSLFVNDI 409
           G PQGS+++P+L +++++ +
Sbjct: 420 GTPQGSIVSPILANIYLHQL 439


>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/52 (21%), Positives = 30/52 (57%)
 Frame = -2

Query: 319 SLDSISRRAVRQEVPYDEHETIRHAHVSTRGLQTVLREWSPHPPLRRLHRQS 164
           S  +I+ +A++  + + +   I++AH  ++ ++ ++ E     PL+RL  ++
Sbjct: 57  SAAAIAMKALKNFIFFGKEMKIQYAHSKSKIIERIVAENDSRGPLKRLRDEA 108


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 127 NRICKFSYGLATGIGGAND 183
           N I  F  G+A  IGGAND
Sbjct: 300 NGIASFLGGIANAIGGAND 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,472
Number of Sequences: 5004
Number of extensions: 53852
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)