Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_F01
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 33 0.35
04_04_0367 + 24736376-24736806,24738257-24738407,24739334-24739420 31 0.80
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 31 1.4
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 29 3.2
05_07_0262 + 28769335-28769391,28769732-28769855,28770175-287702... 29 4.3
12_02_1217 + 27082452-27083593,27085041-27085158 29 5.6
08_01_0089 - 646310-646397,646566-647932 29 5.6
02_01_0200 + 1344755-1345115,1346229-1346366,1346505-1346752 29 5.6
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 28 9.8
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 28 9.8
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 32.7 bits (71), Expect = 0.35
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = -2
Query: 355 DSSCERSRGGAGSLDSISRRAVRQEVPYDEHETIRHAHVSTRGLQTVLREWSPHPPLRRL 176
D RGG G D RR +E + RH H G +++ SP PP +
Sbjct: 33 DDHRRHKRGGGGDDDDDRRRRRHHRDDEEESRSRRHGHHRDGGRRSLSPSESPPPPAAKR 92
Query: 175 HRQS 164
R S
Sbjct: 93 ERSS 96
>04_04_0367 + 24736376-24736806,24738257-24738407,24739334-24739420
Length = 222
Score = 31.5 bits (68), Expect = 0.80
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 277 PYDEHETIRHAHVSTRGLQTVLREWSPHPPLR 182
PY + H H S RG ++R W P PP R
Sbjct: 43 PYQLADASAHLHSSLRGSLPLVRRWVPSPPPR 74
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Frame = +2
Query: 299 SRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSL---------FVNDIPRSPPTQLALFADD 451
+R + GT S P G+ QG L+PLLF L VN R+P +L+ADD
Sbjct: 215 TRIDINGTLSDPFKPMRGLRQGDPLSPLLFVLKAMSAGLLDKVNQWSRAPNN--SLYADD 272
Query: 452 TTVYY 466
+++
Sbjct: 273 AVIFF 277
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 321 PAPPRDLSQLESRKALSSHPSYLAYSSTIFPGRRRPS*LYSP 446
P P ++ +++ +K + +PS L+ S F GR+ LYSP
Sbjct: 240 PRPSKETARMIKKKLVEENPSVLSGSQPAFDGRKN---LYSP 278
>05_07_0262 +
28769335-28769391,28769732-28769855,28770175-28770266,
28770673-28771078,28772057-28772184,28772273-28772332,
28772814-28772963,28772999-28773061,28773062-28773217,
28773361-28773572,28773698-28773796,28774343-28774512,
28774592-28775040
Length = 721
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 266 ARDYPARPCKYPWPANG-AARMVASSTASSFAPPIPVARP 150
+R PCK PW G + + SS S A P+ RP
Sbjct: 539 SRPVSDEPCKNPWVMGGFSGNIPTSSQVSQVAKPVAPGRP 578
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 309 ESREPAPPRDLSQLESRKALSSHPSYLAYSS 401
+S P PPR LS L A + P YLA+ +
Sbjct: 68 DSPRPPPPRPLSGLFYHTASDNQPGYLAFDA 98
>08_01_0089 - 646310-646397,646566-647932
Length = 484
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 331 GGAGSLDSISRRAVRQEVPYDEHETIRH 248
G G + +SRR +R E+P EHET H
Sbjct: 3 GNTGGVRVVSRRVIRPELP-PEHETTVH 29
>02_01_0200 + 1344755-1345115,1346229-1346366,1346505-1346752
Length = 248
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -1
Query: 311 LDIEKSGSTRSPV**ARDYPARPCKYPWPA--NGAARMVASSTASSFAPPIPVAR 153
L + ++ + +PV P++P P PA NGAA A++ APP+P R
Sbjct: 38 LRLARAAAGEAPVETVEAPPSKPEAEPSPAASNGAAVKAEKPPAAAAAPPLPKFR 92
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 312 SREPAPPRDLSQLESRK--ALSSHPSYLAYSST 404
+R P+PPRDL +LE + L S YL Y T
Sbjct: 447 NRNPSPPRDLGELEGVEFPDLPSLDGYLQYWGT 479
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 297 LLDIESREPAPPRDLSQLESRKALSSHPSYLAYSSTIFPGRRR 425
L + E + PP L Q + +++ S H S L + + GR+R
Sbjct: 122 LKEEEEEDEQPPAALLQQQIQESFSRHKSQLVSMTVLMKGRKR 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,792,843
Number of Sequences: 37544
Number of extensions: 449312
Number of successful extensions: 1365
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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