Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_F01
(794 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 91 2e-18
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 91 2e-18
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 77 2e-14
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 77 2e-14
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 69 6e-12
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 69 1e-11
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 67 3e-11
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 64 3e-10
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 63 4e-10
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 62 6e-10
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 61 1e-09
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 58 1e-08
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 58 1e-08
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 58 1e-08
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 58 1e-08
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 58 1e-08
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 58 1e-08
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 56 7e-08
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 56 7e-08
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 56 7e-08
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 56 7e-08
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 53 5e-07
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 49 8e-06
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 48 2e-05
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 43 6e-04
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 37 0.028
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 31 1.8
AE014298-959|AAF46203.1| 1123|Drosophila melanogaster CG4536-PA ... 29 7.3
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 91.1 bits (216), Expect = 2e-18
Identities = 46/117 (39%), Positives = 72/117 (61%)
Frame = +2
Query: 242 MGVPDSLVLIIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRSP 421
+G P L+ I+++FL++R + ++S+ R L AGVPQGSVL P LF++F +DIP++
Sbjct: 629 IGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQAT 688
Query: 422 PTQLALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAVIIXR 592
L+LFADD VY + S S I + S L +++KW+I I P K+ A+ +
Sbjct: 689 NCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKINPNKTNAIFFTK 745
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 91.1 bits (216), Expect = 2e-18
Identities = 46/117 (39%), Positives = 72/117 (61%)
Frame = +2
Query: 242 MGVPDSLVLIIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRSP 421
+G P L+ I+++FL++R + ++S+ R L AGVPQGSVL P LF++F +DIP++
Sbjct: 577 IGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQAT 636
Query: 422 PTQLALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAVIIXR 592
L+LFADD VY + S S I + S L +++KW+I I P K+ A+ +
Sbjct: 637 NCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKINPNKTNAIFFTK 693
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 77.4 bits (182), Expect = 2e-14
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Frame = +2
Query: 251 PDSLVLIIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIP-RSPPT 427
P L L+++ FL R+ V+G +SS +P+ AGVPQGSVL P L+S+F +D+P +P T
Sbjct: 608 PPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVT 667
Query: 428 Q-------LALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAV 580
+ +A +ADDT V S+S L A QW W + I K V
Sbjct: 668 EVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANV 725
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 77.4 bits (182), Expect = 2e-14
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Frame = +2
Query: 251 PDSLVLIIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIP-RSPPT 427
P L L+++ FL R+ V+G +SS +P+ AGVPQGSVL P L+S+F +D+P +P T
Sbjct: 410 PPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVT 469
Query: 428 Q-------LALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAV 580
+ +A +ADDT V S+S L A QW W + I K V
Sbjct: 470 EVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANV 527
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 69.3 bits (162), Expect = 6e-12
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 8/109 (7%)
Frame = +2
Query: 269 IIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIP------RSPPTQ 430
+++ +L +R RV + S PR + AGVPQGSVL PLL+S+F D+P + P +
Sbjct: 613 VLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSVFTADLPCPNAYHMADPRK 672
Query: 431 --LALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKS 571
LA +ADD + YSS + A L L W ++W + + P K+
Sbjct: 673 ALLATYADDIALLYSSNCCNEAARGLQEYLTTLAAWCKRWILKVNPQKT 721
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 68.5 bits (160), Expect = 1e-11
Identities = 34/109 (31%), Positives = 56/109 (51%)
Frame = +2
Query: 242 MGVPDSLVLIIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRSP 421
+ +P+S +++ +L +R R S+ + AGVPQGSVL P L+ ++ DIP +
Sbjct: 601 ISLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLYLIYTADIPTNS 660
Query: 422 PTQLALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAK 568
++ FADDT + SRS +L + + +W WRI + K
Sbjct: 661 RLTVSTFADDTAILSRSRSPIQATAQLALYLIDIKKWLSDWRIKVNEQK 709
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 66.9 bits (156), Expect = 3e-11
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Frame = +2
Query: 269 IIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRSP-----PTQL 433
+++ +L R R S+ + AGVPQGSVL PLL+ L+ +D+P+ + L
Sbjct: 612 LLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPDVSLYGKSML 671
Query: 434 ALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAV 580
A FADD V Y SR + A + +W R+W I I +KS V
Sbjct: 672 ATFADDVCVTYRSRCEHDAADGIQDFAYRFSEWARRWNIGINSSKSNNV 720
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 63.7 bits (148), Expect = 3e-10
Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Frame = +2
Query: 248 VPDSLVLIIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRSPPT 427
+P + +++ +L NR R + + S + AGVPQGSVL P+L++L+ D P
Sbjct: 601 LPQNTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFPIDYNL 660
Query: 428 QLALFADDTTVYYSSRSKSLI-AXKLXSAXL-ALXQWFRKWRIDIYPAKSTAVIIXRGK 598
+ FADDT + SRSK I A L S L ++ +W WRI I K V K
Sbjct: 661 TTSTFADDTAIL--SRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVTFTLNK 717
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 63.3 bits (147), Expect = 4e-10
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Frame = +2
Query: 248 VPDSLVLIIRDFLSNRSSRYRVE-GTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIP---- 412
+P +L +I+ +L+NR+ + + G S + AGVPQGS L PLL+S+F +D+P
Sbjct: 662 LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYI 721
Query: 413 -RSPPTQ---LALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAV 580
R PTQ L+ +ADDT V S + + W KW I + AK+ V
Sbjct: 722 YRPSPTQRIMLSTYADDTIVLSSDTLATAATRNNENYLKTFSDWADKWGISVNAAKTGHV 781
Query: 581 I 583
I
Sbjct: 782 I 782
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 62.5 bits (145), Expect = 6e-10
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Frame = +2
Query: 248 VPDSLVLIIRDFLSNRSSRYRVE-GTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIP---- 412
+P +L +I+ +L+NR+ + + G S + AGVPQGS L PLL+S+F +D+P
Sbjct: 650 LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYI 709
Query: 413 -RSPPTQ---LALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAV 580
R PT+ L+ +ADDT V S + + + W KW I + AK+ V
Sbjct: 710 YRPSPTERIMLSTYADDTIVLSSDTLATAATRNNENYLKSFSDWADKWGISVNAAKTGHV 769
Query: 581 I 583
I
Sbjct: 770 I 770
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 61.3 bits (142), Expect = 1e-09
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Frame = +2
Query: 248 VPDSLVLIIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRSPPT 427
+P + +++ +L N R + + S + AGVPQGSVL P+L++L+ D P
Sbjct: 601 LPQNTHKLLKSYLYNTVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFPIDYNL 660
Query: 428 QLALFADDTTVYYSSRSKSLI-AXKLXSAXL-ALXQWFRKWRIDIYPAKSTAVIIXRGK 598
+ FADDT + SRSK I A L S L ++ +W WRI I K V K
Sbjct: 661 TTSTFADDTAIL--SRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVTFTLNK 717
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 58.4 bits (135), Expect = 1e-08
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Frame = +2
Query: 248 VPDSLVLIIRDFLSNRSSRYRVE-GTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIP---- 412
+P +L +I+ +L+NR+ + + G S + AGVPQGS L P+L+S+F +D+P
Sbjct: 534 LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHI 593
Query: 413 -RSPPTQ---LALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAV 580
PT+ L+ +ADDT V S + + W KW I + AK+ V
Sbjct: 594 YHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHV 653
Query: 581 I 583
I
Sbjct: 654 I 654
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 58.4 bits (135), Expect = 1e-08
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Frame = +2
Query: 248 VPDSLVLIIRDFLSNRSSRYRVE-GTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIP---- 412
+P +L +I+ +L+NR+ + + G S + AGVPQGS L P+L+S+F +D+P
Sbjct: 650 LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHI 709
Query: 413 -RSPPTQ---LALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAV 580
PT+ L+ +ADDT V S + + W KW I + AK+ V
Sbjct: 710 YHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHV 769
Query: 581 I 583
I
Sbjct: 770 I 770
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 58.4 bits (135), Expect = 1e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Frame = +2
Query: 248 VPDSLVLIIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRSPPT 427
+P ++ +++ +L R R + SS + AGVPQGSVL P+L++L+ DIP +
Sbjct: 142 LPQNIHKLLKSYLDKRVFAVRCSSSTSSDFTIEAGVPQGSVLGPILYTLYTADIPTNYQL 201
Query: 428 QLALFADDTTVYYSSR 475
+ FADDT + SR
Sbjct: 202 TIFTFADDTAIISRSR 217
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 58.4 bits (135), Expect = 1e-08
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Frame = +2
Query: 248 VPDSLVLIIRDFLSNRSSRYRVE-GTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIP---- 412
+P +L +I+ +L+NR+ + + G S + AGVPQGS L P+L+S+F +D+P
Sbjct: 650 LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHI 709
Query: 413 -RSPPTQ---LALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAV 580
PT+ L+ +ADDT V S + + W KW I + AK+ V
Sbjct: 710 YHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHV 769
Query: 581 I 583
I
Sbjct: 770 I 770
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 58.4 bits (135), Expect = 1e-08
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Frame = +2
Query: 248 VPDSLVLIIRDFLSNRSSRYRVE-GTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIP---- 412
+P +L +I+ +L+NR+ + + G S + AGVPQGS L P+L+S+F +D+P
Sbjct: 612 LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHI 671
Query: 413 -RSPPTQ---LALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAV 580
PT+ L+ +ADDT V S + + W KW I + AK+ V
Sbjct: 672 YHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHV 731
Query: 581 I 583
I
Sbjct: 732 I 732
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 58.4 bits (135), Expect = 1e-08
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Frame = +2
Query: 248 VPDSLVLIIRDFLSNRSSRYRVE-GTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIP---- 412
+P +L +I+ +L+NR+ + + G S + AGVPQGS L P+L+S+F +D+P
Sbjct: 650 LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHI 709
Query: 413 -RSPPTQ---LALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAV 580
PT+ L+ +ADDT V S + + W KW I + AK+ V
Sbjct: 710 YHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHV 769
Query: 581 I 583
I
Sbjct: 770 I 770
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 55.6 bits (128), Expect = 7e-08
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 19/132 (14%)
Frame = +2
Query: 248 VPDSLVLIIRDFLSNRSSRYRVEG-TRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRS-- 418
+P L ++ ++LSNR+ R++G T S + AGVPQGS+L P+L+S++ +D+P
Sbjct: 206 IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIV 265
Query: 419 ------------PPTQ--LALFADDTTVYYSSRSK-SLIAXKLXSAXL-ALXQWFRKWRI 550
PT LA +ADDT + SRSK + +A L L +W +KW I
Sbjct: 266 KDYMRNISFPDYHPTNIILATYADDTIIL--SRSKYTKLAINLNQNYLNVFCRWSKKWDI 323
Query: 551 DIYPAKSTAVII 586
I AK T I+
Sbjct: 324 AI-NAKKTGHIL 334
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 55.6 bits (128), Expect = 7e-08
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 19/132 (14%)
Frame = +2
Query: 248 VPDSLVLIIRDFLSNRSSRYRVEG-TRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRS-- 418
+P L ++ ++LSNR+ R++G T S + AGVPQGS+L P+L+S++ +D+P
Sbjct: 653 IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIV 712
Query: 419 ------------PPTQ--LALFADDTTVYYSSRSK-SLIAXKLXSAXL-ALXQWFRKWRI 550
PT LA +ADDT + SRSK + +A L L +W +KW I
Sbjct: 713 KDYMRNISFPDYHPTNIILATYADDTIIL--SRSKYTKLAINLNQNYLNVFCRWSKKWDI 770
Query: 551 DIYPAKSTAVII 586
I AK T I+
Sbjct: 771 AI-NAKKTGHIL 781
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 55.6 bits (128), Expect = 7e-08
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 19/132 (14%)
Frame = +2
Query: 248 VPDSLVLIIRDFLSNRSSRYRVEG-TRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRS-- 418
+P L ++ ++LSNR+ R++G T S + AGVPQGS+L P+L+S++ +D+P
Sbjct: 653 IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIV 712
Query: 419 ------------PPTQ--LALFADDTTVYYSSRSK-SLIAXKLXSAXL-ALXQWFRKWRI 550
PT LA +ADDT + SRSK + +A L L +W +KW I
Sbjct: 713 KDYMRNISFPDYHPTNIILATYADDTIIL--SRSKYTKLAINLNQNYLNVFCRWSKKWDI 770
Query: 551 DIYPAKSTAVII 586
I AK T I+
Sbjct: 771 AI-NAKKTGHIL 781
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 55.6 bits (128), Expect = 7e-08
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 19/132 (14%)
Frame = +2
Query: 248 VPDSLVLIIRDFLSNRSSRYRVEG-TRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRS-- 418
+P L ++ ++LSNR+ R++G T S + AGVPQGS+L P+L+S++ +D+P
Sbjct: 653 IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIV 712
Query: 419 ------------PPTQ--LALFADDTTVYYSSRSK-SLIAXKLXSAXL-ALXQWFRKWRI 550
PT LA +ADDT + SRSK + +A L L +W +KW I
Sbjct: 713 KDYMRNISFPDYHPTNIILATYADDTIIL--SRSKYTKLAINLNQNYLNVFCRWSKKWDI 770
Query: 551 DIYPAKSTAVII 586
I AK T I+
Sbjct: 771 AI-NAKKTGHIL 781
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 52.8 bits (121), Expect = 5e-07
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Frame = +2
Query: 245 GVPDSLVLIIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDI----P 412
G+ L +I+ F++NRS R R+ S+ L G+PQGS L+ +LF + + DI
Sbjct: 605 GIGPRLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSPLSVVLFMIAIEDINDIVT 664
Query: 413 RSPPTQLALFADDTTVYYSSRSKSLIAXKLXSAXLALXQW 532
R ++L+ADD ++ ++ + + K + W
Sbjct: 665 RHKDIYISLYADDAIIFTKIKNINTVREKFLEILQEINSW 704
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 48.8 bits (111), Expect = 8e-06
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Frame = +2
Query: 242 MGVPDSLVLIIRDFLSNRSSRYRVE-GTRSSPRPLTAGVPQGSVLTPLLFSLF---VNDI 409
+GVPD + +I ++ +R Y E G RS ++AGVPQGSVL P+L+++ + I
Sbjct: 577 LGVPDYIRGVIGNYFRDRVLWYVTEDGPRS--HQVSAGVPQGSVLGPILWNIMYDGILSI 634
Query: 410 PRSPPTQLALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAVIIX 589
+ +L FADD + +++ + A A +W K + I K+ V++
Sbjct: 635 SKPRGVELHCFADDVAITAVAKTIPELQDISNVAITAAIEWLEKVGLKIAAHKTEVVLLS 694
Query: 590 RGK 598
K
Sbjct: 695 SRK 697
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 47.6 bits (108), Expect = 2e-05
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Frame = +2
Query: 251 PDSLVLIIRDFLSNRSSRYRVEGTRSSPR-PLTAGVPQGSVLTPLLFSLFVNDIPRSP-- 421
P LV IR + SNR E + R +T GVPQGSVL PLL++ + I R P
Sbjct: 18 PAYLVRFIRSYSSNRV--LPCESSEGVFRHQVTGGVPQGSVLGPLLWNTMYDGILRLPLV 75
Query: 422 -PTQLALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAVIIXRGK 598
+++ FADD + + A+ W +++ P K+ AV+I K
Sbjct: 76 GRSEIVGFADDVALLVVDKYPGKAEEMCNRNIRAIEHWLSSMGLELAPEKTKAVLISSRK 135
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 42.7 bits (96), Expect = 6e-04
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +2
Query: 260 LVLIIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDI 409
++ I++F+SNR RV SSP PL G+PQGS ++ +LF + N +
Sbjct: 602 IIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPISVILFLIAFNKL 651
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 37.1 bits (82), Expect = 0.028
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +2
Query: 338 PLTAGVPQGSVLTPLLFSLFVNDIPR--SPPTQLALFADDTTVYYSSRSKSLIAXKLXSA 511
P+T G PQGS+ P ++ + ++ + + P QL+ +ADD + S++++ K
Sbjct: 627 PVTRGCPQGSISGPFIWDILMDVLLQRLQPYCQLSAYADDLLLLVEGNSRAVLEEKGAQL 686
Query: 512 XLALXQWFRKWRIDIYPAKSTAVIIXRGKL 601
+ W + D T +++ +G L
Sbjct: 687 MSIVETWGAEVG-DCLSTSKTVIMLLKGAL 715
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Frame = +2
Query: 245 GVPDSLVLIIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRSPP 424
G P V +++ + +G S GV QG L+P+LF+L ++ + R+ P
Sbjct: 503 GAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLP 562
Query: 425 TQL-----------ALFADDTTVYYSSR 475
+++ A FADD ++ +R
Sbjct: 563 SEIGAKVGNAITNAAAFADDLVLFAETR 590
>AE014298-959|AAF46203.1| 1123|Drosophila melanogaster CG4536-PA
protein.
Length = 1123
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 234 PVACKRCCANGRLIHRFVVCTANPRGQAVTKFANTIFVVAYIC 106
P+A CCAN + + V C ++P Q F N I + +C
Sbjct: 234 PLAWAACCANESVYNLLVDCGSDPDAQ--DSFGNMILHMVVVC 274
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,645,441
Number of Sequences: 53049
Number of extensions: 704916
Number of successful extensions: 1917
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1911
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3695805360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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