Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_F01
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    80   2e-15
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    53   3e-07
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    52   5e-07
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    48   8e-06
AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical ...    33   0.24 
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    31   0.72 
AF038604-1|AAB92011.4|  436|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    29   2.9  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    29   2.9  
AL023828-14|CAA19458.1|  269|Caenorhabditis elegans Hypothetical...    29   5.1  
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
 Frame = +2

Query: 257 SLVLIIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRSPPTQLA 436
           +L++ + +FLSNRS R R+  T SS +  T GVPQG+VL+PLLF ++VNDI    P ++A
Sbjct: 45  NLLIWVNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDISSILPEKVA 104

Query: 437 L--FADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAVIIXRGKL 601
              FADDT + Y+S  K+     L SA  A+  W +  ++ +  +K+  V + + ++
Sbjct: 105 CKQFADDTKL-YASTPKTESENNLQSALDAVVDWTKGSKLTLNQSKTVHVTVGKRRI 160


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 30/113 (26%), Positives = 54/113 (47%)
 Frame = +2

Query: 245 GVPDSLVLIIRDFLSNRSSRYRVEGTRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRSPP 424
           G+   + L + ++L  R  R   +   S    L  GVPQGSV++P LF+ ++ D+P    
Sbjct: 497 GIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQD 556

Query: 425 TQLALFADDTTVYYSSRSKSLIAXKLXSAXLALXQWFRKWRIDIYPAKSTAVI 583
           T L  +ADD ++    +     A K+      + ++ ++  + I   KST  +
Sbjct: 557 TMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTV 609


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
 Frame = +2

Query: 275  RDFLSNRSSRYRVEGTRS-SPRPLTAGVPQGSVLTPLLFSLFVND--IPRSPPTQLALFA 445
            ++FL NR+   ++    S +  P+++GVPQGSV  PLLF LF+N+  I  +P   ++ FA
Sbjct: 854  KEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINNLLIDLAPTINISCFA 913

Query: 446  DDTTVYYS 469
            DD  ++++
Sbjct: 914  DDVKIFHT 921


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
 Frame = +2

Query: 278 DFLSNRSSRYRVEG-TRSSPRPLTAGVPQGSVLTPLLFSLFVNDIPRSPPTQL--ALFAD 448
           DFLS+R+   +V      +  P+++GVP+GSV  P LF +F+N +  S P  +  + FAD
Sbjct: 31  DFLSSRTFSVKVNNHIDPNIHPISSGVPKGSVSGPFLFLIFINSLLLSVPPSISCSAFAD 90

Query: 449 DTTVYYSS 472
           D  VY  S
Sbjct: 91  DLKVYSHS 98


>AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.8 protein.
          Length = 390

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -3

Query: 408 ISLTNKLNRRGVRTEPCGTPAVRGRGEER 322
           ISLTN     G RT+PCGTP     G E+
Sbjct: 50  ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -1

Query: 320 FPRLDIEKSGSTRS-PV**ARDYPARPCKYPWPANGA--ARMVASSTASSFAPPIP 162
           F   D++   +T S P+  +  YP  P  Y WPA+ A  A  + + T +  APP+P
Sbjct: 348 FQFYDVDTMYTTDSTPIPMSYMYPQTPLCYIWPASYAPNASRIVTGTMAPAAPPVP 403


>AF038604-1|AAB92011.4|  436|Caenorhabditis elegans Hypothetical
           protein B0546.2 protein.
          Length = 436

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 261 SCSSYGTSCRTALLDIESREPAPPRDLSQLESRKALSSHPSYLAYSSTIFP 413
           SCSS  +S  +A   I S+E  PP     L +    S++ S +  SS + P
Sbjct: 37  SCSSSASSSSSAAKRIRSQEDGPPSKRWVLSASSTSSTNKSPIPSSSPVLP 87


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 349 SCERSRGGAGSLDSISRRAVRQEVPYDEHETIRHAHVSTRGLQ 221
           +CER R  AG ++  +   V +     E   ++H  V TR LQ
Sbjct: 773 TCERKRKNAGLIELSNMNIVSEAQALKERHMVKHGDVFTRCLQ 815


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 349 SCERSRGGAGSLDSISRRAVRQEVPYDEHETIRHAHVSTRGLQ 221
           +CER R  AG ++  +   V +     E   ++H  V TR LQ
Sbjct: 773 TCERKRKNAGLIELSNMNIVSEAQALKERHMVKHGDVFTRCLQ 815


>AL023828-14|CAA19458.1|  269|Caenorhabditis elegans Hypothetical
           protein Y17G7B.12 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 328 GAGSLDSISRRAVRQEVPYDEHETIRHAHVSTRGLQTVLREW 203
           G  SL  +++  +  E+   EH++I  A V+ R  + V ++W
Sbjct: 220 GTPSLKKLAKEVLGIEIQRGEHDSITDARVALRLYEAVKKQW 261


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 376 CEDRALRDSSCERSRGGAGSLDSISRRAVRQEVPYDEHE 260
           C D A+  S+C   R   G L S+S + ++    +DE E
Sbjct: 192 CVDYAMTSSACTFMRVNGGGLKSVSDQLIQNVGSFDECE 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,543,241
Number of Sequences: 27780
Number of extensions: 337596
Number of successful extensions: 858
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)