Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_E20
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.38 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 185  KAFDKVWHNGLIYKLYNMGVPDRLVLIIRD 274
            KA+ KV  N +I+++Y MG  DR + +  D
Sbjct: 1542 KAYQKVEENEIIFEIYKMG--DRFIGLTSD 1569


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 755 PPPPPXXGG 781
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +1

Query: 595 PXXGXPPPXKXXXXPPPXXXGGXXPPPRGXPXPXLXXGPXP 717
           P  G P P       P     G  P P   P P    G  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 214 TVVPDFVERLRDVEEEGAGRDLFTPI*SYQNVL 116
           T   D +E++  VEEE       TP+   Q V+
Sbjct: 25  TSTSDEIEKITTVEEEKICHKAITPLDRLQRVV 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,887
Number of Sequences: 438
Number of extensions: 10006
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)