Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_E14
(885 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.003
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 32 0.008
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 27 0.23
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.30
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.30
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.30
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 26 0.40
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.53
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.53
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.70
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.93
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.93
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.93
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.93
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.93
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.93
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 24 2.1
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 2.8
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 2.8
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.8
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.5
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 33.5 bits (73), Expect = 0.003
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +3
Query: 111 NATSLSLMIDSLLATYDRESPP---GSKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 278
N +++S ++D+LL YD P G V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 279 IDKRLSWNAGR 311
+D+RL++ G+
Sbjct: 62 VDRRLAFQGGK 72
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 31.9 bits (69), Expect = 0.008
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +3
Query: 105 CENATSLSLMIDS---LLATYDRESPPGSKIV--VNLTLHLRHANIRESESTVRILADLQ 269
C++ TS S + L YDR+ P K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 270 MNWIDKRLSWNA 305
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.1 bits (57), Expect = 0.23
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 316 GCSTWLVSSERLWRPDVVLLN 378
G T V SE +W PD+VL N
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYN 111
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.6 bits (56), Expect = 0.30
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 334 VSSERLWRPDVVLLN 378
V S+ +WRPD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.6 bits (56), Expect = 0.30
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 334 VSSERLWRPDVVLLN 378
V S+ +WRPD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 26.6 bits (56), Expect = 0.30
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 334 VSSERLWRPDVVLLN 378
V S+ +WRPD+VL N
Sbjct: 101 VPSDHIWRPDIVLYN 115
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 26.2 bits (55), Expect = 0.40
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 310 EWGCSTWL-VSSERLWRPDVVLLN 378
E+G T L V SE +W PD+VL N
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYN 111
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.53
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +3
Query: 132 MIDSLLATYDR-ESPPGSK---IVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 296
+++ LL++Y+ E P ++ + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 297 WNAGRMG 317
WN G
Sbjct: 118 WNESEYG 124
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +1
Query: 334 VSSERLWRPDVVLLN 378
++ +LW+PD+++ N
Sbjct: 131 ITPNKLWKPDILMYN 145
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.53
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +3
Query: 132 MIDSLLATYDR-ESPPGSK---IVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 296
+++ LL++Y+ E P ++ + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 297 WNAGRMG 317
WN G
Sbjct: 118 WNESEYG 124
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +1
Query: 334 VSSERLWRPDVVLLN 378
++ +LW+PD+++ N
Sbjct: 131 ITPNKLWKPDILMYN 145
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.4 bits (53), Expect = 0.70
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 316 GCSTWLVSSERLWRPDVVLLN 378
G V SE +W PD+VL N
Sbjct: 104 GVEMLYVPSENIWLPDIVLYN 124
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.93
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 222 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 317
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +1
Query: 334 VSSERLWRPDVVLLN 378
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.93
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 222 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 317
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +1
Query: 334 VSSERLWRPDVVLLN 378
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.93
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 222 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 317
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +1
Query: 334 VSSERLWRPDVVLLN 378
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.93
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 222 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 317
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +1
Query: 334 VSSERLWRPDVVLLN 378
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.93
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 222 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 317
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +1
Query: 334 VSSERLWRPDVVLLN 378
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.93
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 222 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 317
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +1
Query: 334 VSSERLWRPDVVLLN 378
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +1
Query: 598 PXXPXPEPPPXXXXGPXRA 654
P P P PPP GP A
Sbjct: 338 PPKPAPPPPPPSSSGPDSA 356
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.4 bits (48), Expect = 2.8
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +1
Query: 343 ERLWRPDVVLLN 378
+++W+PD+VL N
Sbjct: 106 DKVWKPDIVLFN 117
Score = 22.2 bits (45), Expect = 6.5
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 183 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGRMG 317
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 334 VSSERLWRPDVVLLN 378
V R+WRPD +L N
Sbjct: 82 VPYNRVWRPDTILYN 96
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 2.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 334 VSSERLWRPDVVLLN 378
+ RLW+PDV++ N
Sbjct: 100 IPPHRLWKPDVLMYN 114
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 6.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 343 ERLWRPDVVLLN 378
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,793
Number of Sequences: 438
Number of extensions: 3905
Number of successful extensions: 32
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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