Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_E09
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   227   7e-62
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   227   7e-62
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      31   0.012
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  227 bits (556), Expect = 7e-62
 Identities = 106/135 (78%), Positives = 115/135 (85%)
 Frame = +1

Query: 223 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 402
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 403 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXX 582
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 583 XXXXXXXTSLCFVYP 627
                  TSLCFVYP
Sbjct: 121 SGGAAGATSLCFVYP 135



 Score = 56.0 bits (129), Expect = 4e-10
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 626 PLDFARTRLAADVGKGXGXREFSGLGNXISXIF 724
           PLDFARTRLAADVGK  G REF+GLGN ++ IF
Sbjct: 135 PLDFARTRLAADVGKAGGEREFTGLGNCLTKIF 167



 Score = 28.7 bits (61), Expect = 0.065
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +1

Query: 250 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 429
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 430 LSFWRGNFANVIRYFPTQALNFAFKD 507
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.15
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 310 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 468
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  227 bits (556), Expect = 7e-62
 Identities = 106/135 (78%), Positives = 115/135 (85%)
 Frame = +1

Query: 223 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 402
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 403 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXX 582
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 583 XXXXXXXTSLCFVYP 627
                  TSLCFVYP
Sbjct: 121 SGGAAGATSLCFVYP 135



 Score = 56.0 bits (129), Expect = 4e-10
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 626 PLDFARTRLAADVGKGXGXREFSGLGNXISXIF 724
           PLDFARTRLAADVGK  G REF+GLGN ++ IF
Sbjct: 135 PLDFARTRLAADVGKAGGEREFTGLGNCLTKIF 167



 Score = 28.7 bits (61), Expect = 0.065
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +1

Query: 250 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 429
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 430 LSFWRGNFANVIRYFPTQALNFAFKD 507
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.15
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 310 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 468
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 31.1 bits (67), Expect = 0.012
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 643 TCEVKGGTRSTERWLRRHHRRPDYQRSNARTASSCQR 533
           TC+V G T ST+  L+RH  +  +Q  N+   + C +
Sbjct: 373 TCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALCHK 409


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = -3

Query: 655 GKTGT--CEVKGGTRSTERWLR 596
           G T T  CEV G T  T  WL+
Sbjct: 822 GDTATLHCEVHGDTPVTVTWLK 843


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = -3

Query: 655 GKTGT--CEVKGGTRSTERWLR 596
           G T T  CEV G T  T  WL+
Sbjct: 818 GDTATLHCEVHGDTPVTVTWLK 839


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -3

Query: 694 GEFTXAXSLTDIGGKTGTCEVKGGTRSTE 608
           G++    +    GGK G C +K    S E
Sbjct: 603 GQYGIVFACDGWGGKAGPCAIKSVVPSDE 631


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -3

Query: 694 GEFTXAXSLTDIGGKTGTCEVKGGTRSTE 608
           G++    +    GGK G C +K    S E
Sbjct: 641 GQYGIVFACDGWGGKAGPCAIKSVVPSDE 669


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 649 TGTCEVKGGTRSTERWLR 596
           T TC V+G    T  WL+
Sbjct: 326 TFTCNVRGNPIKTVSWLK 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,424
Number of Sequences: 438
Number of extensions: 4586
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)