Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_E08
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 28 1.8
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 27 3.1
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 4.1
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 26 5.5
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 5.5
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23... 26 7.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.2
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 7.2
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 25 9.5
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 9.5
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 166 GSTGFPLPVAQPPSSWHA 113
GS GFP+P + P +S+HA
Sbjct: 312 GSAGFPIPGSVPSTSYHA 329
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 384 SPPQQRLHRRLPTPFPAGHLRQRMTLAPLPP 292
SPP +RL R L + AG++ ++ ++ LPP
Sbjct: 122 SPPLKRLQRFLVSENEAGNINRQEAVSMLPP 152
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -2
Query: 513 DPEGRSLPPLSSAHPTR---RQTLTLMMAPVTAR 421
DP+ R LPP+ S HP R RQ L+ +AP R
Sbjct: 63 DPKVRFLPPVDSYHPKRNHARQKLS-SLAPTRLR 95
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 381 PPQQRLHRRLPTPFPAGHLRQRMTLAPLPP-HERK 280
PP +RL R+ P PF + L+ + P PP H+R+
Sbjct: 52 PPTRRLPRK-PLPFRSTSLQPPSSQPPAPPTHQRE 85
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 26.2 bits (55), Expect = 5.5
Identities = 8/18 (44%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = -1
Query: 145 PVAQP-PSSWHALPPPEY 95
P+A+P P++W+ +PPP +
Sbjct: 1132 PIAKPAPANWYPVPPPGF 1149
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 235 PFGPAASPSLTSAERVEPALSHLGSTGFPLP 143
P P+ S TSA V ALS + ST F P
Sbjct: 268 PASPSTSSVATSAPSVPSALSSISSTPFMKP 298
>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 238 VPFGPAASPSLTSAERVEPALSHLGS--TGFPLPVAQPPSSWHALP 107
+P +S SL+SA R ++ + FP+P P + W +P
Sbjct: 1 MPLSTQSSDSLSSAGRQSFGVNSVSDFLAQFPIPTNLPSNKWQDIP 46
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = -1
Query: 226 PAASPSLTSAERVEPALSHLGSTGFPLPVAQPPSSWHALPPPEYAGQHAPTEVEA 62
P+A PSL P L PLP P + LPP A AP A
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP--PLPPAAPAPPPAPAPAPA 485
>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 168
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 178 LSHLGSTGFPLPVAQPPSS--WHALPPPEYAGQHAPTEV 68
L + ST P P A PP S W A P +P++V
Sbjct: 53 LIDMNSTVLPTPPASPPGSPYWEAKPVSHTVFLESPSDV 91
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 214 PSLTSAERVEPALSH--LGSTGFPLPVAQPPSSWHALPPPEYAGQHAP 77
PS S V P LSH + S P V+QP ++ + P P+++ P
Sbjct: 277 PSHLSQSNVPPQLSHSSVPSPAPPRSVSQP--TYFSQPMPQFSSSFVP 322
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 360 RRLPTPFPAGHLRQRMTL 307
+RLPTP PA L++R L
Sbjct: 591 KRLPTPIPAEELQKRYNL 608
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,496
Number of Sequences: 5004
Number of extensions: 55814
Number of successful extensions: 136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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