Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_E03
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.31 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.41 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.9  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    26   5.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = +3

Query: 369 PPXXXXGXAPPXKPPP--XXXGPPPP 440
           PP    G  PP  PPP     GPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 370 PPXKXGGXPPXXNPPXPXGXPPPP 441
           P    GG PP   PP   G  PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 369 PPXXXXGXAPPXKPPPXXXGPPPPXGXXKK 458
           PP    G  PP +PPP     PPP G  KK
Sbjct: 11  PPPPPPGFEPPSQPPP-----PPPPGYVKK 35



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +1

Query: 370 PPXKXGGXPPXXNPPXPXGXPPPPXGXXKK 459
           PP    G  P   PP     PPPP G  KK
Sbjct: 11  PPPPPPGFEPPSQPP-----PPPPPGYVKK 35


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = -1

Query: 493 GGXXXXKKXGGFFXXXPXG-GGGPXXXGGGFXG-GAXPXFXXGG 368
           GG        G F   P G GGGP   GGG  G G  P    GG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = -3

Query: 494 GGXXXXKKXXGXFFXXPXGGGGXPXGXGGFXXG-GXPPXXXGG 369
           GG        G F   P G GG P G GG   G G  P   GG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 30/90 (33%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
 Frame = -2

Query: 438 GGGXPXXXGGVXXGGPXPXFXG-GGAPXFSXXPPFXXXPXXGGFXGEKPFLGGPLSQKKG 262
           GGG     GG   GGP P   G GG   F            GG  G   F GGP   + G
Sbjct: 187 GGGFGGFGGG--SGGPPPGPGGFGGFGGFGGE-----GHHHGGHGG---FGGGPGGFEGG 236

Query: 261 PXSQNDXXXPXGGALPXXRGNPGXGX*XPG 172
           P          GG L    G PG     PG
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/62 (33%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
 Frame = -1

Query: 466 GGFFXXXPXGGGGPXXXGGGF--XGGAXPXFXXGGXPXFFXFXPLXXXPXXXGFXGGETX 293
           GG F     G GGP    GGF   GG        G    F   P        GF GG   
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 292 FG 287
           FG
Sbjct: 247 FG 248


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
 Frame = +1

Query: 370  PPXKXGGXPPXXNPPXPXGXP--PPP 441
            PP      PP   PP P G P  PPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 396  PPXKPPPXXXGPPPPXGXXKKXPP 467
            PP   PP    PP P G     PP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 60  ISSHLHLTNFTNSKMCDEXSWPRXVIXNG 146
           + +HL    +T++ + DE  WP+ +  NG
Sbjct: 701 VPNHLTFCLYTHTAIFDEKYWPKGIRANG 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,729
Number of Sequences: 5004
Number of extensions: 23206
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)