Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_E03
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = +1

Query: 352 GKXGGXP-PXKXGGXPPXXNPPXPXGXPPP 438
           G  G  P P +    P   +PP P   PPP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/44 (29%), Positives = 15/44 (34%)
 Frame = +1

Query: 280 GPXQKXFLPPKTPXXGGXXKGGXXGKXGGXPPXKXGGXPPXXNP 411
           GP       P+ P      +G       G PP    G PP  NP
Sbjct: 22  GPQPSPHQSPQAPQ-----RGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +1

Query: 361 GGXPPXKXGGXPPXXNPPXPXGXPPPP 441
           G  PP      PP  N     G PP P
Sbjct: 407 GQLPPSAGAPMPPIPNMSNMSGMPPLP 433



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +1

Query: 364 GXPPXKXGGXPPXXNPPXPXGXPP 435
           G PP    G PP   P  P    P
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 409 PPXPXGXPPPP 441
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,145
Number of Sequences: 438
Number of extensions: 4719
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)